Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1095 93.3 3e-14 >seq1095 Length=312686 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||||||| | || | || || ||||| || || ||||| ||||||| | | Sbjct 89080 CGCAACACAAGGTGGAGAGTAGATTCTTTCTGGATGTTGTAGTCAGACAGTGTCCTTCCA 89021 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||||||||| || || | ||| |||||||| | || || || || || Sbjct 89020 TCCTCCAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTG 88961 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || |||| |||| | || | | ||||||||| ||||| ||| |||| || Sbjct 88960 TCTTGAATCTTAGCCT---TCACGTTCTCAATCGTGTCAGAGGGTTCAACTTCCAATGTG 88904 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || |||||||||||||| |||||||| Sbjct 88903 ATGGTTTTGCCGGTCAGAGTTTTTACGAAGATTTGCAT 88866 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/217 (69%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 ||| ||||| || | || || || ||||| || ||||| ||||| | | || | || Sbjct 81801 CAAAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATC 81742 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 || | |||||||| ||| || | ||| |||||||| | ||| || ||||| || || Sbjct 81741 TTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTC 81682 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 ||| |||| |||| | | || || ||| |||| ||| |||| ||| || Sbjct 81681 TTGGATCTTGGCCT---TTACATTCTCGATAGTATCGGATGGTTCAACTTCCAAAGTGAT 81625 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || |||||||||||||| || |||||| Sbjct 81624 GGTCTTGCCGGTCAGAGTTTTTACGAATATCTGCATG 81588 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/217 (69%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 ||| ||||| || | || || || ||||| || ||||| ||||| | | || | || Sbjct 88622 CAAAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATC 88563 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 || | |||||||| ||| || | ||| |||||||| | ||| || ||||| || || Sbjct 88562 TTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTC 88503 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 ||| |||| |||| | | || || ||| |||| ||| |||| ||| || Sbjct 88502 TTGGATCTTGGCCT---TTACATTCTCGATAGTATCGGATGGTTCAACTTCCAAAGTGAT 88446 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || |||||||||||||| || |||||| Sbjct 88445 GGTCTTGCCGGTCAGAGTTTTTACGAATATCTGCATG 88409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318596717421084