Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq738 253 2e-62 seq2120 132 4e-26 >seq738 Length=407637 Score = 253 bits (280), Expect = 2e-62 Identities = 603/887 (68%), Gaps = 37/887 (4%) Strand=Plus/Plus Query 12841 ATTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTT 12900 ||| ||||| || || |||||||||||| || || || |||||||| || ||||| || Sbjct 114281 ATTAGACATTACTGATGATTTTTGATATTCACTCACCCTCTTTTCAAAGAAATTTGTCTT 114340 Query 12901 -TCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTT 12959 | || || |||||||| ||||| ||||| |||||||| | ||||| | | | || Sbjct 114341 ATTAATC-AATGAAATATTATCCATGAAATCCAAAGGATTAT--GAACATTGTAAATCTT 114397 Query 12960 T--ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAA 13017 | | | || | ||| | ||| ||||| ||||||||||| ||| || | |||| | Sbjct 114398 TGAATATCCAAGTTCAATTAATAATCTATCAGCAACAAATCTTATATAATTAATCAT-AG 114456 Query 13018 ATCA-CAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTA 13076 || | || |||| |||| | || || || | | ||||| | ||| | | ||| | Sbjct 114457 ATGAGCAATTCAAACCTAAAATTTCAACGGGTAATGACTCTGTCAGAAATTCTCCTTCAA 114516 Query 13077 TATCAACTGCTTCGATAACTATGTCTCTTATTACGTTC---TC---TAATGGAGGATTTG 13130 ||||||||||||| | ||| | | | || || || |||| | | ||| Sbjct 114517 TATCAACTGCTTCCTGTATTAT-TGAATAA--ACCTTTGAATCAGATAATTTATGTTTTA 114573 Query 13131 ATAGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTA 13190 | | | || | | | ||||||||| ||||| || || | |||||||||||||| | Sbjct 114574 AATATTTCCTATATAAGAGACATGCAAATTCACAATGTAAGGCCTCATCTCTACTTATAA 114633 Query 13191 GCTCGTT--TGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGC 13248 | || || ||||| |||| ||| ||||||| || ||||| | ||||||||| || Sbjct 114634 GTTCATTACTGAAA--GTTAAACCTGGCATAATATTACGCTTTTTCAACCAAAATATTGC 114691 Query 13249 AGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACC 13308 ||||| || || || || || |||||||| |||||||||||| ||| | || | Sbjct 114692 TGCAAAACTCCCAGAGAAGAAAATCCCTTCAACCACTGCAAACGCTACCAATCGCTCTGC 114751 Query 13309 ATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGT-TTAACGC 13367 | | ||||| | | ||| | || | ||||| || | |||| | ||| | Sbjct 114752 GAAACTTGAATTTTGATCATATATATATTTATTTGCCCATATTCCCTTTTTTCTTATTGA 114811 Query 13368 AGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATAT--A 13425 || || | |||||||||||||| | || ||| || | | |||| | ||| | Sbjct 114812 AGGG-ATGGTCTCTATTGCGTTAAAAAGATGATTCTTCTGAT--CTGTAGATTCTATGAA 114868 Query 13426 AGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACC 13485 ||| |||| |||||||||||||| |||||||| ||||||||||| | || ||| |||| Sbjct 114869 AGTTTCTAATAATAAGCTATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACT 114928 Query 13486 ATAAAAACATCTAGCCTC--TGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTT 13542 || ||| ||||||| || |||| || ||||| || | |||||||| || || Sbjct 114929 GTAGAAAAATCTAGCTTCAATGAT--TTGTACTTCTTGAAT-GAATCTTTCAATCAAATT 114985 Query 13543 TTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAG--TATGTGCTTAATAAAtttt 13600 || ||| || || | ||||||||| ||||| |||||| | ||||| | | Sbjct 114986 ATCACCAACAATTGTATCTGATGAAGCAAAAAATGCAAGAATATGTGAT--ATAAAATGT 115043 Query 13601 ttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCA 13660 ||||| | | || || ||| ||||| | || ||| || |||| ||| ||||| || Sbjct 115044 TTTTCATCTGATGTCAGCTTCTTCCAATGAGTAATATCCTTAGATAGATCGACCTCTTCT 115103 Query 13661 ACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATC 13707 |||||||||||| || |||| | |||||| | ||||||||| Sbjct 115104 GTGGTCCAAAAAGATGCTACAGATTGTTTATACTTGTACCATATATC 115150 >seq2120 Length=154726 Score = 132 bits (146), Expect = 4e-26 Identities = 236/336 (70%), Gaps = 14/336 (4%) Strand=Plus/Minus Query 13379 TCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATAT--AAGTATCTATCA 13436 |||||||||||||| | || ||| || | | |||| | ||| |||| |||| | Sbjct 146118 TCTATTGCGTTAAAAAGATGATTCTTCTGAT--CTGTAGATTCTATGAAAGTTTCTAATA 146061 Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496 ||||||||||||| |||||||| ||||||||||| | || ||| |||| || ||| ||| Sbjct 146060 ATAAGCTATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATC 146001 Query 13497 TAGCCTC--TGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTA 13553 |||| || |||| || ||||| || | |||||||| || || || ||| | Sbjct 146000 TAGCTTCAATGAT--TTGTACTTCTTGAAT-GAATCTTTCAATCAAATTATCACCAACAA 145944 Query 13554 TCCCGTCACTAGCAGCaaaaaaaGCAAG--TATGTGCTTAATAAAttttttttCGTTTTC 13611 | || | ||||||||| ||||| |||||| | ||||| | |||||| | | Sbjct 145943 TTGTATCTGATGAAGCAAAAAATGCAAGAATATGTGAT--ATAAAATGTTTTTCATCTGA 145886 Query 13612 TGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAA 13671 || || ||| ||||| | || ||| || |||| ||| ||||| || |||||| || Sbjct 145885 TGTCAGCTTCTTCCAATGAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAGAA 145826 Query 13672 AGAAGCAACAGCCTTCTTATACATCATCCATATATC 13707 ||| || |||| | |||||| | ||||||||| Sbjct 145825 AGATGCTACAGATTGTTTATACTTGTACCATATATC 145790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430737849542316