Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq1173 203 8e-48 >seq1173 Length=295699 Score = 203 bits (224), Expect = 8e-48 Identities = 569/863 (66%), Gaps = 19/863 (2%) Strand=Plus/Minus Query 33274 GTCCGGCGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAAC 33333 ||| ||||| || ||||| ||||||||||| ||||||| || || | || | || || Sbjct 75476 GTCTGGCGAAAATGACATTGCCCAGCCCACAGGTTTTCGAGCAAATAAATCCAATACCAC 75417 Query 33334 GGCGAGGTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTG 33393 || || |||||||| || || ||||| |||||||| ||||| || ||||| |||| Sbjct 75416 CGCCAGATACGCCCATCGTGAGCCTGTCCAAATATAGGTTACATCGCCACACCAAACCTA 75357 Query 33394 ATTTGGCTCGGTCACGGCGAACTGCCTTTCAAGGTAGTTAGGGATAGCAACATGTTCATG 33453 | || |||| || | || || || | || || || ||| |||| | |||| Sbjct 75356 GTCAGGTCCGGTGACAGAAAATTGTCTGTTGAGAAGATTGGGAATATCAACGCGCTCATC 75297 Query 33454 ACCACCACGTTTATACCGGTGAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCAT 33513 | || ||||| || | || | || || || |||| | | ||||| ||| Sbjct 75296 TTCTCCCCGTTTGTATTGATGTTTTCGCGTTTGGCAACTGATAATGTTTAACTCTTCCAT 75237 Query 33514 GAGCCTGCCAGCAAGCCAGCGTCCCATCTGGTAGCC---TCTCCGGGTTGCCATTGTGGC 33570 || | || || ||||| || || | | || | | ||| | || ||||| Sbjct 75236 TAGTTTACCGGCCAGCCAACGGCCAAGTTTTACACCGTATGTATTGGTAACTATCGTGGC 75177 Query 33571 GATGCTTCTTGCTCCGGCCGAACCGTGGCTGATG--CCATGTAGCTCAAGT-ACCTGACT 33627 ||| | || || || || || ||| |||| | ||| |||| | ||| | || Sbjct 75176 GATACGCCTCGCGCCAGCAGACCCGCCACTGACGTTCCA---AGCTTCGCTGACCAGGCT 75120 Query 33628 GCGTAATACAGCCCGTCTGCCGTCTGGTTTTTCAGGACGGTTTTTCCAGTATCTGTAGCT 33687 ||| ||| | |||| | |||||| | || || ||| || | || || Sbjct 75119 ACGTTTTACTGTCCGTTCAGCATCTGGTGCCTTGGGTCGACA---CCAATAGCGATAACT 75063 Query 33688 GCTGCGATGAACCCCGAACACATGGCAGAGTGTGACCACAGGATAATGCGCTCTGAGTTT 33747 ||| || |||| | || | | || | | || |||||| |||| || || || Sbjct 75062 GCTTCGGTGAATATCAAAAATACCACACAACGCTTTTACCGGATAAAGCGCCCTTAGCTT 75003 Query 33748 CCCGATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAAT 33807 | | || | |||| | |||| ||||| ||||| |||||||| |||||||||||||| Sbjct 75002 GTCAACTACCAAGAATTTTTCATTGAGTCCGACATTAAGAGCGCAGTAGCCTTTTTTAAG 74943 Query 33808 ATTTCATTCTCCATTTCAATGCGTTGTAGCTTTTTCCTGAGCTCACGGATTTCAATTTGT 33867 || |||||||||||||| | |||||| | |||||| | | || | || ||||| || Sbjct 74942 ATGTCATTCTCCATTTCCAGGCGTTGAATTTTTTTCTTCA-TTCCCTGAACTCAATGTGC 74884 Query 33868 TCCGG-GGTAATGGGGGAGGCTTTTGGTGTTTTGCCCTGACGCTCATCACGCAGTTGTTT 33926 ||||| | |||||| || | | |||||| || ||||| || ||| || | | Sbjct 74883 TCCGGCGTTAATGGCAGA-CCAGGGGCTGTTTTTCCTTGACGTTCTAAACGAAGGGCTCT 74825 Query 33927 GACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTGGCGGCATCTGCCACCGT 33986 |||||||| | || | ||||||| |||| ||| ||||| || || || || Sbjct 74824 TACCCATCTGCTAATAGCTGAAAGGCTTACATTCATCGCTTTCGCTGCCTCCAGGTGGGT 74765 Query 33987 GTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTAAAATTTCt 34046 ||| || ||||||| || | || |||| ||| | |||||| || || | | || | Sbjct 74764 GTAATTTTGGTCAAGGACTAATTTGGCGGTTTCACATTTAAATTCAGCAGTCA---TTTT 74708 Query 34047 ttttttCATTGGAGCACCTGT-GTTGTTCTGAGGTGAGCATATCACCTCTGTTCAGGTGG 34105 ||| ||||||| ||||| | || |||||| ||||||||||||| | |||||| Sbjct 74707 TTTACTCATTGGTCCACCTATAAAAATTATGAGGTAAGCATATCACCTCAACTTAGGTGG 74648 Query 34106 CCAAATTCAGTGTGCCACTTCAA 34128 ||||||||||| ||||||| ||| Sbjct 74647 CCAAATTCAGTATGCCACTACAA 74625 Score = 98.7 bits (108), Expect = 2e-16 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 33758 GAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTCT 33817 ||||||| ||||| ||||| ||||| |||||||| |||||||||||||| || ||||||| Sbjct 38822 GAGAACTTTTCAGTGAGTCCGACATTAAGAGCGCAGTAGCCTTTTTTAAGATGTCATTCT 38881 Query 33818 CCATTTCAATGCGTTGTAGCTTTT 33841 ||||||| | |||||| | |||| Sbjct 38882 CCATTTCCAGGCGTTGGGGTTTTT 38905 Score = 98.7 bits (108), Expect = 2e-16 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 33758 GAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTCT 33817 ||||||| ||||| ||||| ||||| |||||||| |||||||||||||| || ||||||| Sbjct 46190 GAGAACTTTTCAGTGAGTCCGACATTAAGAGCGCAGTAGCCTTTTTTAAGATGTCATTCT 46131 Query 33818 CCATTTCAATGCGTTGTAGCTTTT 33841 ||||||| | |||||| | |||| Sbjct 46130 CCATTTCCAGGCGTTGGGGTTTTT 46107 Score = 80.6 bits (88), Expect = 7e-11 Identities = 95/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 33029 CTGAAGCTTACGTAACCCACCACCGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGT 33088 ||| ||||| |||||| | ||||||||||||| ||||||| || | ||| || Sbjct 38679 CTGCAGCTTTGGTAACCAGCTGTCGGCATCCATTCGGTCTTCAGGCTACGGAAAAATAAC 38738 Query 33089 TCCATTGGGCTGTTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTAT 33148 ||||||||||| || ||||| ||||| || | ||| |||| || || | ||||| || Sbjct 38739 TCCATTGGGCTATTGTCCCAACAGTTCCCCCTGCGGTTCATGCTTTGAGTCATCTGATAA 38798 Query 33149 CGCCACAAT 33157 | | ||||| Sbjct 38799 CACTACAAT 38807 Score = 80.6 bits (88), Expect = 7e-11 Identities = 95/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 33029 CTGAAGCTTACGTAACCCACCACCGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGT 33088 ||| ||||| |||||| | ||||||||||||| ||||||| || | ||| || Sbjct 46333 CTGCAGCTTTGGTAACCAGCTGTCGGCATCCATTCGGTCTTCAGGCTACGGAAAAATAAC 46274 Query 33089 TCCATTGGGCTGTTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTAT 33148 ||||||||||| || ||||| ||||| || | ||| |||| || || | ||||| || Sbjct 46273 TCCATTGGGCTATTGTCCCAACAGTTCCCCCTGCGGTTCATGCTTTGAGTCATCTGATAA 46214 Query 33149 CGCCACAAT 33157 | | ||||| Sbjct 46213 CACTACAAT 46205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124746992197980