Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_005344.1
Length=39043
Score E
Sequences producing significant alignments: (Bits) Value
seq1173 203 8e-48
>seq1173
Length=295699
Score = 203 bits (224), Expect = 8e-48
Identities = 569/863 (66%), Gaps = 19/863 (2%)
Strand=Plus/Minus
Query 33274 GTCCGGCGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAAC 33333
||| ||||| || ||||| ||||||||||| ||||||| || || | || | || ||
Sbjct 75476 GTCTGGCGAAAATGACATTGCCCAGCCCACAGGTTTTCGAGCAAATAAATCCAATACCAC 75417
Query 33334 GGCGAGGTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTG 33393
|| || |||||||| || || ||||| |||||||| ||||| || ||||| ||||
Sbjct 75416 CGCCAGATACGCCCATCGTGAGCCTGTCCAAATATAGGTTACATCGCCACACCAAACCTA 75357
Query 33394 ATTTGGCTCGGTCACGGCGAACTGCCTTTCAAGGTAGTTAGGGATAGCAACATGTTCATG 33453
| || |||| || | || || || | || || || ||| |||| | ||||
Sbjct 75356 GTCAGGTCCGGTGACAGAAAATTGTCTGTTGAGAAGATTGGGAATATCAACGCGCTCATC 75297
Query 33454 ACCACCACGTTTATACCGGTGAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCAT 33513
| || ||||| || | || | || || || |||| | | ||||| |||
Sbjct 75296 TTCTCCCCGTTTGTATTGATGTTTTCGCGTTTGGCAACTGATAATGTTTAACTCTTCCAT 75237
Query 33514 GAGCCTGCCAGCAAGCCAGCGTCCCATCTGGTAGCC---TCTCCGGGTTGCCATTGTGGC 33570
|| | || || ||||| || || | | || | | ||| | || |||||
Sbjct 75236 TAGTTTACCGGCCAGCCAACGGCCAAGTTTTACACCGTATGTATTGGTAACTATCGTGGC 75177
Query 33571 GATGCTTCTTGCTCCGGCCGAACCGTGGCTGATG--CCATGTAGCTCAAGT-ACCTGACT 33627
||| | || || || || || ||| |||| | ||| |||| | ||| | ||
Sbjct 75176 GATACGCCTCGCGCCAGCAGACCCGCCACTGACGTTCCA---AGCTTCGCTGACCAGGCT 75120
Query 33628 GCGTAATACAGCCCGTCTGCCGTCTGGTTTTTCAGGACGGTTTTTCCAGTATCTGTAGCT 33687
||| ||| | |||| | |||||| | || || ||| || | || ||
Sbjct 75119 ACGTTTTACTGTCCGTTCAGCATCTGGTGCCTTGGGTCGACA---CCAATAGCGATAACT 75063
Query 33688 GCTGCGATGAACCCCGAACACATGGCAGAGTGTGACCACAGGATAATGCGCTCTGAGTTT 33747
||| || |||| | || | | || | | || |||||| |||| || || ||
Sbjct 75062 GCTTCGGTGAATATCAAAAATACCACACAACGCTTTTACCGGATAAAGCGCCCTTAGCTT 75003
Query 33748 CCCGATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAAT 33807
| | || | |||| | |||| ||||| ||||| |||||||| ||||||||||||||
Sbjct 75002 GTCAACTACCAAGAATTTTTCATTGAGTCCGACATTAAGAGCGCAGTAGCCTTTTTTAAG 74943
Query 33808 ATTTCATTCTCCATTTCAATGCGTTGTAGCTTTTTCCTGAGCTCACGGATTTCAATTTGT 33867
|| |||||||||||||| | |||||| | |||||| | | || | || ||||| ||
Sbjct 74942 ATGTCATTCTCCATTTCCAGGCGTTGAATTTTTTTCTTCA-TTCCCTGAACTCAATGTGC 74884
Query 33868 TCCGG-GGTAATGGGGGAGGCTTTTGGTGTTTTGCCCTGACGCTCATCACGCAGTTGTTT 33926
||||| | |||||| || | | |||||| || ||||| || ||| || | |
Sbjct 74883 TCCGGCGTTAATGGCAGA-CCAGGGGCTGTTTTTCCTTGACGTTCTAAACGAAGGGCTCT 74825
Query 33927 GACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTGGCGGCATCTGCCACCGT 33986
|||||||| | || | ||||||| |||| ||| ||||| || || || ||
Sbjct 74824 TACCCATCTGCTAATAGCTGAAAGGCTTACATTCATCGCTTTCGCTGCCTCCAGGTGGGT 74765
Query 33987 GTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTAAAATTTCt 34046
||| || ||||||| || | || |||| ||| | |||||| || || | | || |
Sbjct 74764 GTAATTTTGGTCAAGGACTAATTTGGCGGTTTCACATTTAAATTCAGCAGTCA---TTTT 74708
Query 34047 ttttttCATTGGAGCACCTGT-GTTGTTCTGAGGTGAGCATATCACCTCTGTTCAGGTGG 34105
||| ||||||| ||||| | || |||||| ||||||||||||| | ||||||
Sbjct 74707 TTTACTCATTGGTCCACCTATAAAAATTATGAGGTAAGCATATCACCTCAACTTAGGTGG 74648
Query 34106 CCAAATTCAGTGTGCCACTTCAA 34128
||||||||||| ||||||| |||
Sbjct 74647 CCAAATTCAGTATGCCACTACAA 74625
Score = 98.7 bits (108), Expect = 2e-16
Identities = 72/84 (86%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 33758 GAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTCT 33817
||||||| ||||| ||||| ||||| |||||||| |||||||||||||| || |||||||
Sbjct 38822 GAGAACTTTTCAGTGAGTCCGACATTAAGAGCGCAGTAGCCTTTTTTAAGATGTCATTCT 38881
Query 33818 CCATTTCAATGCGTTGTAGCTTTT 33841
||||||| | |||||| | ||||
Sbjct 38882 CCATTTCCAGGCGTTGGGGTTTTT 38905
Score = 98.7 bits (108), Expect = 2e-16
Identities = 72/84 (86%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 33758 GAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTCT 33817
||||||| ||||| ||||| ||||| |||||||| |||||||||||||| || |||||||
Sbjct 46190 GAGAACTTTTCAGTGAGTCCGACATTAAGAGCGCAGTAGCCTTTTTTAAGATGTCATTCT 46131
Query 33818 CCATTTCAATGCGTTGTAGCTTTT 33841
||||||| | |||||| | ||||
Sbjct 46130 CCATTTCCAGGCGTTGGGGTTTTT 46107
Score = 80.6 bits (88), Expect = 7e-11
Identities = 95/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 33029 CTGAAGCTTACGTAACCCACCACCGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGT 33088
||| ||||| |||||| | ||||||||||||| ||||||| || | ||| ||
Sbjct 38679 CTGCAGCTTTGGTAACCAGCTGTCGGCATCCATTCGGTCTTCAGGCTACGGAAAAATAAC 38738
Query 33089 TCCATTGGGCTGTTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTAT 33148
||||||||||| || ||||| ||||| || | ||| |||| || || | ||||| ||
Sbjct 38739 TCCATTGGGCTATTGTCCCAACAGTTCCCCCTGCGGTTCATGCTTTGAGTCATCTGATAA 38798
Query 33149 CGCCACAAT 33157
| | |||||
Sbjct 38799 CACTACAAT 38807
Score = 80.6 bits (88), Expect = 7e-11
Identities = 95/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 33029 CTGAAGCTTACGTAACCCACCACCGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGT 33088
||| ||||| |||||| | ||||||||||||| ||||||| || | ||| ||
Sbjct 46333 CTGCAGCTTTGGTAACCAGCTGTCGGCATCCATTCGGTCTTCAGGCTACGGAAAAATAAC 46274
Query 33089 TCCATTGGGCTGTTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTAT 33148
||||||||||| || ||||| ||||| || | ||| |||| || || | ||||| ||
Sbjct 46273 TCCATTGGGCTATTGTCCCAACAGTTCCCCCTGCGGTTCATGCTTTGAGTCATCTGATAA 46214
Query 33149 CGCCACAAT 33157
| | |||||
Sbjct 46213 CACTACAAT 46205
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 124746992197980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |