Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1095 91.5 1e-13 seq1979 84.2 2e-11 >seq1095 Length=312686 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| ||||| || || || || ||||| ||| ||||||||||||||||| |||| Sbjct 81816 ACCTCCACGCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGA 81757 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | | || || | || || |||||||| ||| | | || | ||||||||| || | Sbjct 81756 AAGAGTG-CGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGG 81698 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||||||| || || ||| | | | | || ||||||| | || Sbjct 81697 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATAGTATCGGATGGTTCAA 81638 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || ||||| |||||||| || || |||||||| Sbjct 81637 CTTCCAAAGTGATGGTCTTGCCGGTCAGAGTTTTTACGAATATCTGCAT 81589 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| ||||| || || || || ||||| ||| ||||||||||||||||| |||| Sbjct 88637 ACCTCCACGCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGA 88578 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | | || || | || || |||||||| ||| | | || | ||||||||| || | Sbjct 88577 AAGAGTG-CGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGG 88519 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||||||| || || ||| | | | | || ||||||| | || Sbjct 88518 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATAGTATCGGATGGTTCAA 88459 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || ||||| |||||||| || || |||||||| Sbjct 88458 CTTCCAAAGTGATGGTCTTGCCGGTCAGAGTTTTTACGAATATCTGCAT 88410 >seq1979 Length=171087 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||||| ||| | ||| | ||| ||||| |||||| || |||||||| || | Sbjct 87732 ACCTCCGCGCAGCCTGAGCACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGA 87791 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATC 48612 || || |||||||||||||||| ||| || | || |||||||| ||||| Sbjct 87792 CAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGTTGATC 87845 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||||| ||| | ||| | ||| ||||| |||||| || |||||||| || | Sbjct 152537 ACCTCCGCGCAGCCTGAGCACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGA 152596 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATC 48612 || || |||||||||||||||| ||| || | || |||||||| ||||| Sbjct 152597 CAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGTTGATC 152650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421012171274558