Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq2118 482 1e-131 seq1173 104 1e-17 >seq2118 Length=155287 Score = 482 bits (534), Expect = 1e-131 Identities = 805/1160 (69%), Gaps = 10/1160 (1%) Strand=Plus/Plus Query 71480 ACCGATTGATTTGATAACACTTGCTGAAGCACTTGAACAGAACGGTAAATTAGAACGCGC 71539 ||| |||||||| || || | ||||| | | |||||| | || |||| || ||| Sbjct 16881 ACCAATTGATTTAATTACTTTATCTGAATCGTTAGAACAGCAAGGCGAATTGGATAGCGT 16940 Query 71540 CGGTGGTTTTGCGTACCTTGCGGAGATGTCAAAGAACACGCCCAGCTCGGCAAATATTTG 71599 |||||||||||| || | || || | | || || || || || | || || ||| Sbjct 16941 CGGTGGTTTTGCCTATTTAGCAGAATTAGCTAAAAATACCCCAAGTGCTGCCAACATTAA 17000 Query 71600 TGCTTATGCGGATATCGTTCGTGAACGCGCGGTTGTTCGTGAAATGATTTCCGTCGCAAA 71659 |||||||| ||||| || || ||||| || ||||| ||||| |||||| | || ||||| Sbjct 17001 CGCTTATGCAGATATTGTGCGCGAACGTGCTGTTGTGCGTGACATGATTGCGGTGGCAAA 17060 Query 71660 TGAAATAGCCGAAGCTGGATATG---CGCAGGATGGCAGGGGCAGCAATGAATTGCTGGA 71716 ||| || || || || || |||| | || | | |||| |||| | || || ||||| Sbjct 17061 TGAGATCGCTGATGCGGGTTATGATCCTCAAGGTCGCAG---CAGCGAAGAGTTACTGGA 17117 Query 71717 TATGGCCGAGCGCCGCGTTTTTGAAATAGCTGAAAAACGACAAAAGAGCGGTAGTGGTCC 71776 | | || || || |||||| |||| || |||| || || | | | ||||| Sbjct 17118 TTTAGCTGAATCACGTGTTTTTCAAATTGCAGAAACTCGTGCTAATAAAGATGACGGTCC 17177 Query 71777 AAAAGATATCGCCAGCATTCTCGATGCAACGGTATCTCGCATAGAAGAGTTGTTTCAGCG 71836 |||| || | || || || ||||| || ||| |||| | |||| Sbjct 17178 GAAAGGGATTGAAGAGATCCTGTCTGAGACGGTGGAAAAAATTGAACAGTTATATCAGAA 17237 Query 71837 ACCACATGATGGTGTAACGGGGCTTGATACGGGATTTACC--GATCTCAATAAGAAGACG 71894 || ||||||| ||||| || | ||| || | ||| ||||| || || ||| Sbjct 17238 GCCTTATGATGGCGTAACCGGTGTCTCTACCGGCT--ACCAGGATCTGGATCGAAAAACG 17295 Query 71895 GCAGGGCTTCAGCCGTCCGATCTCATCATTGTCGCCGCCCGCCCATCTATGGGGAAGACC 71954 ||||| | || || ||||| || || || || || || || || ||||| || ||| Sbjct 17296 GCAGGATTACAAAACTCTGATCTGATTATCGTAGCAGCTCGTCCTTCCATGGGTAAAACC 17355 Query 71955 ACGTTTGCGATGAATCTCGTCGAAAATGCCGCAGTTCGTAACGATAAGCCCGTATTGGTT 72014 || |||||||||||| | ||| |||| || | | || || || || ||| || Sbjct 17356 ACTTTTGCGATGAATTTATGTGAACATGCGGCCATGATAGAAGAAAAACCGGTTTTGATT 17415 Query 72015 TTTAGCCTTGAGATGCCGAGCCACCAGCTGATGATGCGCTCACTGGCTTCTCTTGCACGC 72074 ||||| | || |||||| | || | |||||||| | |||||| | | || Sbjct 17416 TTTAGTTTGGAAATGCCGGCTAATCAAATCATGATGCGTATGTTAGCTTCTTTATCGCGT 17475 Query 72075 GTTGATCAGACTCGTATTCGGACAGGGCAACTTAACGACGAGGATTGGGCGCGGGTTTCT 72134 |||||||| ||||||||||| || || |||||| | ||||| ||||||||||| |||| Sbjct 17476 GTTGATCAAACTCGTATTCGAACTGGCCAACTTGATGACGAAGATTGGGCGCGTATTTCC 17535 Query 72135 GGCGCAATGGGTATTCTGTTGGACAAGCAGAATATTTTTATTGATGACTCAAGCGCCCTG 72194 | | ||||| | || |||| || | ||||| | |||||||||||| | | Sbjct 17536 AGTACCATGGGGTTGTTGATGGAAAAACGCAATATGTATATTGATGACTCCGCTGGGTTA 17595 Query 72195 ACGCCGACAGAGCTACGTTCCCGCGCTCGTCGTGTTTATAAAGAAAATGGTGGTTTGAGC 72254 ||||||||||| | ||||| || ||||| || ||||| ||| |||||||||| || Sbjct 17596 ACGCCGACAGAAGTTCGTTCACGTGCTCGCCGGGTTTACCGTGAACATGGTGGTTTAAGT 17655 Query 72255 ATGATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAAGATAACCGAACG 72314 | ||||||||||| || || || |||||||| || || ||| ||||| || || Sbjct 17656 CTAATTATGATCGATTATCTTCAGCTTATGCGAGTTCCTTCTCTGTCTGATAATCGTACA 17715 Query 72315 CTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCG 72374 || || |||||||| ||||| || || || || | ||||| || || ||||||||||| Sbjct 17716 CTTGAGATTGCCGAAATTTCCCGTTCGCTTAAATCATTGGCAAAAGAGTTACAAGTACCT 17775 Query 72375 GTGGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTA 72434 ||| | |||||||||||||||||||| || ||||| | ||||| || |||||| Sbjct 17776 GTGATCGCATTGTCACAACTTAATCGTAGCCTGGAACAAAGAGCGGATAAGAAACCGGTC 17835 Query 72435 AATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTG 72494 |||||||||||||| ||||| || | ||||||||||| || || | ||||||||| | Sbjct 17836 AATTCAGATTTACGGGAATCCGGCTCCATTGAGCAGGATGCCGATTTAATTATGTTTATT 17895 Query 72495 TATCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAATTATC 72554 ||||| || || |||||| || || || | || || | || || | |||||| Sbjct 17896 TATCGAGATGAGGTTTATAACGATAATTCAGATCTTAAAGGGGTAGCAGAAATTATTATC 17955 Query 72555 GGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAATACTCA 72614 || ||||| || |||||||| ||||| || || | || |||| || || |||| ||| Sbjct 17956 GGTAAGCAGCGTAATGGCCCGATTGGAACAGTACGTCTGACTTTCAATGGACAATGGTCA 18015 Query 72615 CGGTTTGATAACTATGCCGG 72634 || |||||||||||||| || Sbjct 18016 CGTTTTGATAACTATGCTGG 18035 >seq1173 Length=295699 Score = 104 bits (114), Expect = 1e-17 Identities = 190/273 (70%), Gaps = 4/273 (1%) Strand=Plus/Minus Query 31778 CTGAGCGCCCTGGGTTAAAAAAGGTACTCCGTATGCTTTCCAGAGGT-GATACCCTGGTC 31836 |||| ||||| ||||||| | ||| |||||| | ||||| ||||| ||||| Sbjct 93642 CTGAACGCCCAGGGTTAACCAGAACACTGGAAATGCTT-CGAGAGGGCGATACGCTGGTT 93584 Query 31837 GTATGGAAGTTAGACCGTCTTGGGCGCAGCATGCGTCACTTAGTTGTGCTGGTGGAAGAG 31896 |||||||| | || ||||| || || ||| | || | |||| | | | |||| Sbjct 93583 GTATGGAAACTCGATCGTCTGGGTCGTAGCGTAAAACAGCTTGTTGATATCGCTGGAGAG 93524 Query 31897 CTGCGTGA-CAGAGGCATTAACTTCCGGAGTCTCACTGACTCCATCGACACCAGTACACC 31955 |||| | ||| |||||| | ||| |||||||| || | || || ||| | ||||| Sbjct 93523 CTGCACAAACAG-GGCATTCAGTTCAAAAGTCTCACGGATGCTATTGATACCGGAACACC 93465 Query 31956 AATGGGGCGCTTTTTCTTTCACGTAATGGGGGCGCTGGCAGAAATGGAACGTGAGCTTAT 32015 |||||| |||||||| || || |||| || ||||||||||| || ||| | || Sbjct 93464 GTCGGGGCGTTTTTTCTTCCATGTTATGGCTAGCCTTGCAGAAATGGAGCGAGAGTTGAT 93405 Query 32016 CGTTGAACGTACACGCGCTGGACTTGATGCAGC 32048 | |||||||| || || || |||||| |||| Sbjct 93404 AATCGAACGTACGCGGGCAGGTCTTGATTCAGC 93372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303063136577118