Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_005882.1 Length=36748 Score E Sequences producing significant alignments: (Bits) Value seq3221 141 2e-29 >seq3221 Length=74604 Score = 141 bits (156), Expect = 2e-29 Identities = 327/485 (67%), Gaps = 21/485 (4%) Strand=Plus/Plus Query 5545 AGGCCCGGTTCGAACTTGCGCTCGATGAGGTTCCGCGCGTTCTCAACCTGTCCGGTGGCA 5604 ||||| | ||| || | || ||||| | || ||||| || || || ||||| || Sbjct 54199 AGGCCAGATTCAAAATGGCACTCGAGAATGTCGCGCGCCTTTTCCACTGAGCCGGTAGCG 54258 Query 5605 CGGGCGTTGCCAACCTTGTGGACAATCAGCTCGATTCCGAGCGAGCGGCACAGGTTGCGC 5664 |||||||||| | || ||| | || || | || ||||| | ||||| ||| ||| Sbjct 54259 CGGGCGTTGCGGGCTTTATGGGCGATAAGTTGAATACCGAGGGTTTTGCACAAGTTACGC 54318 Query 5665 GTCATGGACG---CCGTGTTCGCCGATCCGGCGTCGAGCATCA-GAATGCGTGGCACACC 5720 || |||||| || | || | |||| |||| | || | | || || ||||| || Sbjct 54319 ATCGTGGACGAGACCAGG---GCACAACCGGGGTCG-GTATAAAGGATACGCGGCACGCC 54374 Query 5721 GTGCAGCAGGTCGGCCCCGCCGCGCTCCTGCATAGCGTTGATGAGCG--TCGAGCAGAGG 5778 ||||| | ||||||||| |||||||||||||| || || || ||| ||| | | Sbjct 54375 ATGCAGTACGTCGGCCCCACCGCGCTCCTGCATGGCATTAATCAGCACATCGGTAAAATT 54434 Query 5779 TTCTCGCCCGATTCCGCACCCATGACGTACTCGGTGTAAATCCAGTCGCTCGCGTGGTCG 5838 || | | | ||| |||| | | |||||||| |||||||||| |||| | ||||||| Sbjct 54435 TTGTGTC--GTTTCGCCACCGAAGCGGTACTCGGCGTAAATCCAGCCGCTGGTGTGGTCG 54492 Query 5839 GAGATTTCGTAGCTCCACACACGATCGGCCGCGATCCGGGCGAGGTTCTTTGGCTTGTTC 5898 | | || | ||| || || ||| | || ||| |||| || || ||||||||| Sbjct 54493 GTCAGCTCAAATGACCAGACGCGGTCGTTAACAATGCGGTCGAGATTTTTGGGCTTGTTC 54552 Query 5899 TTGTAGAACTCAGCGTGATCCATCACGCGCAGGCCG--TTCGC---ACGGGCATCGGCTA 5953 |||| || || || | ||||| |||||||||| |||| || || | || Sbjct 54553 TTGTTAAATTCCGCCTCTGTCATCATGCGCAGGCCGCTATCGCGTGTCGTGCGTTTTTTA 54612 Query 5954 CCGG----CTTCAGGTAGTACAGCACGCACAGGCTCGCGTCGATCTGCCACACGTGATTC 6009 ||| |||||||| || ||||| ||||| ||| || | |||||| | ||||| Sbjct 54613 TCGGGATTTTTCAGGTAATAAAGCACACACAGCGACGCATCCAGCTGCCAGGCATGATTG 54672 Query 6010 GGATG 6014 ||||| Sbjct 54673 GGATG 54677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117407052521160