Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_005882.1
Length=36748
Score E
Sequences producing significant alignments: (Bits) Value
seq3221 141 2e-29
>seq3221
Length=74604
Score = 141 bits (156), Expect = 2e-29
Identities = 327/485 (67%), Gaps = 21/485 (4%)
Strand=Plus/Plus
Query 5545 AGGCCCGGTTCGAACTTGCGCTCGATGAGGTTCCGCGCGTTCTCAACCTGTCCGGTGGCA 5604
||||| | ||| || | || ||||| | || ||||| || || || ||||| ||
Sbjct 54199 AGGCCAGATTCAAAATGGCACTCGAGAATGTCGCGCGCCTTTTCCACTGAGCCGGTAGCG 54258
Query 5605 CGGGCGTTGCCAACCTTGTGGACAATCAGCTCGATTCCGAGCGAGCGGCACAGGTTGCGC 5664
|||||||||| | || ||| | || || | || ||||| | ||||| ||| |||
Sbjct 54259 CGGGCGTTGCGGGCTTTATGGGCGATAAGTTGAATACCGAGGGTTTTGCACAAGTTACGC 54318
Query 5665 GTCATGGACG---CCGTGTTCGCCGATCCGGCGTCGAGCATCA-GAATGCGTGGCACACC 5720
|| |||||| || | || | |||| |||| | || | | || || ||||| ||
Sbjct 54319 ATCGTGGACGAGACCAGG---GCACAACCGGGGTCG-GTATAAAGGATACGCGGCACGCC 54374
Query 5721 GTGCAGCAGGTCGGCCCCGCCGCGCTCCTGCATAGCGTTGATGAGCG--TCGAGCAGAGG 5778
||||| | ||||||||| |||||||||||||| || || || ||| ||| | |
Sbjct 54375 ATGCAGTACGTCGGCCCCACCGCGCTCCTGCATGGCATTAATCAGCACATCGGTAAAATT 54434
Query 5779 TTCTCGCCCGATTCCGCACCCATGACGTACTCGGTGTAAATCCAGTCGCTCGCGTGGTCG 5838
|| | | | ||| |||| | | |||||||| |||||||||| |||| | |||||||
Sbjct 54435 TTGTGTC--GTTTCGCCACCGAAGCGGTACTCGGCGTAAATCCAGCCGCTGGTGTGGTCG 54492
Query 5839 GAGATTTCGTAGCTCCACACACGATCGGCCGCGATCCGGGCGAGGTTCTTTGGCTTGTTC 5898
| | || | ||| || || ||| | || ||| |||| || || |||||||||
Sbjct 54493 GTCAGCTCAAATGACCAGACGCGGTCGTTAACAATGCGGTCGAGATTTTTGGGCTTGTTC 54552
Query 5899 TTGTAGAACTCAGCGTGATCCATCACGCGCAGGCCG--TTCGC---ACGGGCATCGGCTA 5953
|||| || || || | ||||| |||||||||| |||| || || | ||
Sbjct 54553 TTGTTAAATTCCGCCTCTGTCATCATGCGCAGGCCGCTATCGCGTGTCGTGCGTTTTTTA 54612
Query 5954 CCGG----CTTCAGGTAGTACAGCACGCACAGGCTCGCGTCGATCTGCCACACGTGATTC 6009
||| |||||||| || ||||| ||||| ||| || | |||||| | |||||
Sbjct 54613 TCGGGATTTTTCAGGTAATAAAGCACACACAGCGACGCATCCAGCTGCCAGGCATGATTG 54672
Query 6010 GGATG 6014
|||||
Sbjct 54673 GGATG 54677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 117407052521160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |