Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq734 114 7e-21 seq1357 111 8e-20 seq1236 111 8e-20 seq238 111 8e-20 >seq734 Length=408397 Score = 114 bits (126), Expect = 7e-21 Identities = 82/94 (87%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || ||||| |||| | ||||||||||| |||||||||| ||||||||||||||||| Sbjct 253549 AAATAATACAAAAA-ATATTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTA 253491 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 || ||||||||| ||||||||||||||||||||| Sbjct 253490 GCCCGACGCTCTAACCAACTGAGCTAATGGGCCG 253457 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||| ||||||||| |||||| Sbjct 241086 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCTCGACGCTCTAACCAAC 241027 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 241026 TGAGCTAATGGGCC 241013 Score = 87.8 bits (96), Expect = 9e-13 Identities = 76/96 (79%), Gaps = 13/96 (14%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||| Sbjct 83522 AAAAAAT---ATTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCCCGAC 83466 Query 11504 G----------CTCTRACCAACTGAGCTAATGGGCC 11529 | |||| |||||||||||||||||||| Sbjct 83465 GCTCTAACCAACTCTAACCAACTGAGCTAATGGGCC 83430 >seq1357 Length=262802 Score = 111 bits (122), Expect = 8e-20 Identities = 76/86 (88%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| ||||||||||| |||||||||| |||||||||||||||||||| ||| Sbjct 79223 AAAAAAT---ATTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCAGGAC 79279 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 79280 GCTCTAACCAACTGAGCTAATGGGCC 79305 >seq1236 Length=282681 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 246712 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 246653 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 246652 TGAGCTAATGGGCCG 246638 >seq238 Length=715386 Score = 111 bits (122), Expect = 8e-20 Identities = 76/86 (88%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||||| |||||||||| |||||||||| ||||||||||||||||||| |||| Sbjct 111565 AAAAAATC---TTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCTCGAC 111621 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 111622 GCTCTAACCAACTGAGCTAATGGGCC 111647 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261342823192408