Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_006548.1 Length=38439 Score E Sequences producing significant alignments: (Bits) Value seq3221 95.1 3e-15 >seq3221 Length=74604 Score = 95.1 bits (104), Expect = 3e-15 Identities = 233/348 (67%), Gaps = 13/348 (4%) Strand=Plus/Plus Query 7813 CCTGCAACTGTGCCTCCATCGGCAAGTGCAACGAGATCGTCATCATCTTCGCTGATCAGT 7872 || |||| ||||| || ||||| | || | ||||| ||||||| ||| | | | | Sbjct 55626 CCAGCAATAGTGCCGCCTTCGGCTAAAACATCTAGATCCTCATCATTTTCAGTTAATAAT 55685 Query 7873 TCGAGTAGCTTCGCCTTCCCCAAAACGGACAACGTTGTCCGTTTTGAC---TCCAGTGCA 7929 || || || || || ||||||||| ||||||| ||||||| || | | || Sbjct 55686 TCATAAAGTTTAGCTTTTCCCAAAACGCCTAACGTTGCGCGTTTTGGGGCTTCAATTCCA 55745 Query 7930 GGAGACAGGTATTTGAGCGCCGCCTGCATCATCCGGCGCGCTGC--GCGCTCATGTATCC 7987 | | | || || ||||||||||| | ||| |||| ||| | || | || Sbjct 55746 TTACCTAAAAACTTTAGGCTTGCCTGCATCATTCTGCGAGCTGTTTGCGGT-ATA-AGCC 55803 Query 7988 CCAA---CTGTTCAGTGACGATCTGAGTGAAGTCGCCGTGGGGCTCATGCTCTTTCAGCA 8044 | || || |||| | ||| | || || || || || || |||| |||||| || | Sbjct 55804 CTAAATCCTTTTCA---AGGATTTTTGTAAATTCCCCATGAGGTTCATTCTCTTTAAGAA 55860 Query 8045 CGATCAGGCGCTTTCCGGCTTCCAGCATGGCTTCTGCCGACTGGGCCATGTAGAAGCGCG 8104 || || ||||| || || || ||||||||||| || ||| ||||| |||||||||| Sbjct 55861 TAATGAGTCGCTTCCCCGCCTCAAGCATGGCTTCGGCGCTCTGTGCCATATAGAAGCGCG 55920 Query 8105 CCTCATTGACCACGCGGATGCGGTCGTAAGGGAGGCCGTCGCCGAACT 8152 |||||| || | ||| ||| | || || | ||| |||||| ||| Sbjct 55921 CCTCATGCACAATGCGCTCGCGCTGATAGGGCAAGCCCTCGCCGTACT 55968 Score = 86.0 bits (94), Expect = 2e-12 Identities = 258/390 (66%), Gaps = 15/390 (4%) Strand=Plus/Minus Query 7785 CATGCGCTCGATGTCGTCTAG-GTCGAGGCCTGCAACTGTGCCTCCATCGGCAAGTGCAA 7843 ||| || || | ||| ||||| ||| | || || | ||||| || ||||| | || Sbjct 56917 CATCCGGTCAACGTCATCTAGCGTCAAT-CCGGCGATGGTGCCGCCTTCGGCTAAAACAT 56859 Query 7844 CGAGATCGTCATCATCTTCGCTGATCAGTTCGAGTAGCTTCGCCTTCCCCAAAACGGACA 7903 | ||||| ||||||| ||| | | | ||| || || || || || |||||| | Sbjct 56858 CTAGATCCTCATCATTTTCAGTTAATAATTCATAAAGTTTAGCTTTTCCTAAAACGCCTA 56799 Query 7904 ACGTTGTCCGTTTTGAC---TCCAGTGCAGGAGACAGGTATTTGAGCGCCGCCTGCATCA 7960 |||||| ||||||| || | | || | | | || || |||||||||| Sbjct 56798 ACGTTGCGCGTTTTGGGGCTTCAATTCCATTACCTAAAAACTTTAGGCTTGCCTGCATCA 56739 Query 7961 TCCGGCGCGCTG--CGCGCTCATGTATCCCCAA---CTGTTCAGTGACGATCTGAGTGAA 8015 | | ||| |||| ||| | || | ||| || || |||| | ||| | || || Sbjct 56738 TTCTGCGAGCTGTTTGCGGT-AT-AAGCCCTAAATCCTTTTCA---AGGATTTTTGTAAA 56684 Query 8016 GTCGCCGTGGGGCTCATGCTCTTTCAGCACGATCAGGCGCTTTCCGGCTTCCAGCATGGC 8075 || || || || |||| |||||| || | ||||| ||||| ||||| |||||||| || Sbjct 56683 TTCCCCATGAGGTTCATTCTCTTTAAGAATAATCAGCCGCTTCCCGGCCTCCAGCATCGC 56624 Query 8076 TTCTGCCGACTGGGCCATGTAGAAGCGCGCCTCATTGACCACGCGGATGCGGTCGTAAGG 8135 || || || ||||| ||||||||||| |||| || | ||| | || || || Sbjct 56623 CTCGGCACTTTGCGCCATATAGAAGCGCGCTTCATGCACAATGCGTTCCCTCTCATAGGG 56564 Query 8136 GAGGCCGTCGCCGAACTGCGCCATGACCTC 8165 || || || || || ||||||| ||||| Sbjct 56563 TAGCCCATCCCCAAAACGCGCCATCACCTC 56534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122815260797196