Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_006548.1
Length=38439
Score E
Sequences producing significant alignments: (Bits) Value
seq3221 95.1 3e-15
>seq3221
Length=74604
Score = 95.1 bits (104), Expect = 3e-15
Identities = 233/348 (67%), Gaps = 13/348 (4%)
Strand=Plus/Plus
Query 7813 CCTGCAACTGTGCCTCCATCGGCAAGTGCAACGAGATCGTCATCATCTTCGCTGATCAGT 7872
|| |||| ||||| || ||||| | || | ||||| ||||||| ||| | | | |
Sbjct 55626 CCAGCAATAGTGCCGCCTTCGGCTAAAACATCTAGATCCTCATCATTTTCAGTTAATAAT 55685
Query 7873 TCGAGTAGCTTCGCCTTCCCCAAAACGGACAACGTTGTCCGTTTTGAC---TCCAGTGCA 7929
|| || || || || ||||||||| ||||||| ||||||| || | | ||
Sbjct 55686 TCATAAAGTTTAGCTTTTCCCAAAACGCCTAACGTTGCGCGTTTTGGGGCTTCAATTCCA 55745
Query 7930 GGAGACAGGTATTTGAGCGCCGCCTGCATCATCCGGCGCGCTGC--GCGCTCATGTATCC 7987
| | | || || ||||||||||| | ||| |||| ||| | || | ||
Sbjct 55746 TTACCTAAAAACTTTAGGCTTGCCTGCATCATTCTGCGAGCTGTTTGCGGT-ATA-AGCC 55803
Query 7988 CCAA---CTGTTCAGTGACGATCTGAGTGAAGTCGCCGTGGGGCTCATGCTCTTTCAGCA 8044
| || || |||| | ||| | || || || || || || |||| |||||| || |
Sbjct 55804 CTAAATCCTTTTCA---AGGATTTTTGTAAATTCCCCATGAGGTTCATTCTCTTTAAGAA 55860
Query 8045 CGATCAGGCGCTTTCCGGCTTCCAGCATGGCTTCTGCCGACTGGGCCATGTAGAAGCGCG 8104
|| || ||||| || || || ||||||||||| || ||| ||||| ||||||||||
Sbjct 55861 TAATGAGTCGCTTCCCCGCCTCAAGCATGGCTTCGGCGCTCTGTGCCATATAGAAGCGCG 55920
Query 8105 CCTCATTGACCACGCGGATGCGGTCGTAAGGGAGGCCGTCGCCGAACT 8152
|||||| || | ||| ||| | || || | ||| |||||| |||
Sbjct 55921 CCTCATGCACAATGCGCTCGCGCTGATAGGGCAAGCCCTCGCCGTACT 55968
Score = 86.0 bits (94), Expect = 2e-12
Identities = 258/390 (66%), Gaps = 15/390 (4%)
Strand=Plus/Minus
Query 7785 CATGCGCTCGATGTCGTCTAG-GTCGAGGCCTGCAACTGTGCCTCCATCGGCAAGTGCAA 7843
||| || || | ||| ||||| ||| | || || | ||||| || ||||| | ||
Sbjct 56917 CATCCGGTCAACGTCATCTAGCGTCAAT-CCGGCGATGGTGCCGCCTTCGGCTAAAACAT 56859
Query 7844 CGAGATCGTCATCATCTTCGCTGATCAGTTCGAGTAGCTTCGCCTTCCCCAAAACGGACA 7903
| ||||| ||||||| ||| | | | ||| || || || || || |||||| |
Sbjct 56858 CTAGATCCTCATCATTTTCAGTTAATAATTCATAAAGTTTAGCTTTTCCTAAAACGCCTA 56799
Query 7904 ACGTTGTCCGTTTTGAC---TCCAGTGCAGGAGACAGGTATTTGAGCGCCGCCTGCATCA 7960
|||||| ||||||| || | | || | | | || || ||||||||||
Sbjct 56798 ACGTTGCGCGTTTTGGGGCTTCAATTCCATTACCTAAAAACTTTAGGCTTGCCTGCATCA 56739
Query 7961 TCCGGCGCGCTG--CGCGCTCATGTATCCCCAA---CTGTTCAGTGACGATCTGAGTGAA 8015
| | ||| |||| ||| | || | ||| || || |||| | ||| | || ||
Sbjct 56738 TTCTGCGAGCTGTTTGCGGT-AT-AAGCCCTAAATCCTTTTCA---AGGATTTTTGTAAA 56684
Query 8016 GTCGCCGTGGGGCTCATGCTCTTTCAGCACGATCAGGCGCTTTCCGGCTTCCAGCATGGC 8075
|| || || || |||| |||||| || | ||||| ||||| ||||| |||||||| ||
Sbjct 56683 TTCCCCATGAGGTTCATTCTCTTTAAGAATAATCAGCCGCTTCCCGGCCTCCAGCATCGC 56624
Query 8076 TTCTGCCGACTGGGCCATGTAGAAGCGCGCCTCATTGACCACGCGGATGCGGTCGTAAGG 8135
|| || || ||||| ||||||||||| |||| || | ||| | || || ||
Sbjct 56623 CTCGGCACTTTGCGCCATATAGAAGCGCGCTTCATGCACAATGCGTTCCCTCTCATAGGG 56564
Query 8136 GAGGCCGTCGCCGAACTGCGCCATGACCTC 8165
|| || || || || ||||||| |||||
Sbjct 56563 TAGCCCATCCCCAAAACGCGCCATCACCTC 56534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 122815260797196
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |