Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq738 246 3e-60
seq2120 96.9 4e-15
seq412 82.4 8e-11
>seq738
Length=407637
Score = 246 bits (272), Expect = 3e-60
Identities = 594/889 (67%), Gaps = 33/889 (4%)
Strand=Plus/Plus
Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243
||||||||| ||||| || || ||||| || ||||||||||| |||||| |||
Sbjct 114299 TTTTTGATATTCACTCACCCTCTTTTCAAAGAAATTTGTCTTATTAATCAATGAAATATT 114358
Query 21244 TTCCATAAAATCAAATGGATTTTCAG-ATT-TAAATATTTTATTACAACCCAGTTCTGAT 21301
||||| ||||| || ||||| | | ||| ||||| ||| | || || ||||| |
Sbjct 114359 ATCCATGAAATCCAAAGGATTATGAACATTGTAAATCTTTGAATAT--CCAAGTTCAATT 114416
Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361
||||||||||| || |||||| |||||| | | ||| || ||||||| ||| |
Sbjct 114417 AATAATCTATCAGCAACAAATCTTATATAATTAATCATAGATGAGCAATTCAAACCTAAA 114476
Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421
| || || || | | | ||||| ||| | ||| ||| || ||||| |||
Sbjct 114477 ATTTCAACGGGTAATGACTCTGTCAGAAATTCTCCTTCAATATCAACTGCTTCCTGTATT 114536
Query 21422 ATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATC--------- 21472
|| | || | ||| || | || ||| | | || |||||| ||
Sbjct 114537 AT-TGAATAAACCTT--TGAATCAG----ATA-ATTTATGTTTTAAATATTTCCTATATA 114588
Query 21473 --AAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATG 21530
| ||||||||| |||||||| || | ||||| |||||||| | ||||||| || |
Sbjct 114589 AGAGACATGCAAATTCACAATGTAAGGCCTCATCTCTACTTATAAGTTCATTACTGAAAG 114648
Query 21531 TTAAACCGGGCATTAATCCT-CTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAA 21589
||||||| ||||| ||| | | |||||| ||||||||||||| ||||| || ||
Sbjct 114649 TTAAACCTGGCAT-AATATTACGCTTTTTCAACCAAAATATTGCTGCAAAACTCCCAGAG 114707
Query 21590 AAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649
|||||||| || ||||| | ||||| || || ||||| || || | | || | || |
Sbjct 114708 AAGAAAATCCCTTCAACCACTGCAAACGCTACCAATCGCTCTGCGAAACTTGAATTTTGA 114767
Query 21650 TCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATA 21709
|| |||| |||| | ||||||| || |||||| | | || || || || || ||
Sbjct 114768 TCATATATATATTTATTTGCCCATATTCCCTTTTTTCTTATTGAAGGGATGGTCTCTATT 114827
Query 21710 GCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTA 21769
|| || ||||||||||| || | |||| | |||| |||
Sbjct 114828 GCGTTAAAAAGATGATTCTTCTGATCTGTAGATTCTATGAAAGTTTCTAATAATAAGCTA 114887
Query 21770 TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC- 21828
||||| || |||||||||||||| || | || ||||| | ||| ||| |||| || ||
Sbjct 114888 TACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATCTAGCTTCA 114947
Query 21829 -TGAACATTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886
||| ||| || || |||| |||| || | ||| || ||| || ||| |||
Sbjct 114948 ATGA--TTTGTACTTCTTGAAT-GAATCTTTCAATCAAATTATCACCAACAATTGTATCT 115004
Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT 21946
| ||||||||||| | |||| | |||||||| | ||| | ||| | ||
Sbjct 115005 GATGAAGCAAAAAATGCAAGAATATGTGATATAAAATGTTTTTCATCTGATGTCAGCTTC 115064
Query 21947 TTCCAATCTAATAA-ATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAAT 22005
||||||| | ||| ||| || |||| ||| || ||||| || |||||||| || |
Sbjct 115065 TTCCAAT-GAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAAAAAGATGCTAC 115123
Query 22006 AGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATT 22054
|| | ||||||| | ||| ||||| |||| |||||||||||||
Sbjct 115124 AGATTGTTTATACTTGTACCATATATCGGGGTATAATATTGGAAATATT 115172
>seq2120
Length=154726
Score = 96.9 bits (106), Expect = 4e-15
Identities = 203/293 (69%), Gaps = 10/293 (3%)
Strand=Plus/Minus
Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826
|||||||| || |||||||||||||| || | || ||||| | ||| ||| |||| ||
Sbjct 146055 CTATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATCTAGCT 145996
Query 21827 TC--TGAACATTGAACCTCG-GAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCA 21883
|| ||| ||| || || |||| || || || | ||| || ||| || ||| |
Sbjct 145995 TCAATGAT--TTGTACTTCTTGAATGAA-TCTTTCAATCAAATTATCACCAACAATTGTA 145939
Query 21884 TCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT 21943
|| | ||||||||||| | |||| | |||||||| | ||| | ||| |
Sbjct 145938 TCTGATGAAGCAAAAAATGCAAGAATATGTGATATAAAATGTTTTTCATCTGATGTCAGC 145879
Query 21944 TTTTTCCAATCTAATAA-ATCTTTTGATAAATCTACTTCTTCAGTTGTCCA-AAAGCTAG 22001
|| ||||||| | ||| ||| || |||| ||| || ||||| || ||||| |||| | |
Sbjct 145878 TTCTTCCAAT-GAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAGAAAGAT-G 145821
Query 22002 CAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATT 22054
| | || | ||||||| | ||| ||||| |||| ||||| |||||||
Sbjct 145820 CTACAGATTGTTTATACTTGTACCATATATCGGGGTATAATATTGAAAATATT 145768
>seq412
Length=567167
Score = 82.4 bits (90), Expect = 8e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 21128 TAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTT 21187
|| ||||||||||| |||| |||||||| || || ||| ||| | ||| ||
Sbjct 169685 TAGAAATCAGCATCCAATGTAAAAACATTTTCGTCCTTTCGGCTCATGACTCCGGCCTTC 169744
Query 21188 TGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCC 21247
|| || || | |||| | |||||||| ||||| ||||||||||||| || || ||||
Sbjct 169745 TGGTATTCGCCAACTTTCTTTTCGAAGAAATTCGTCTTTCCTTCCAGAGAAATGTGTTCC 169804
Query 21248 ATAAAATCAAATGGATTTTC 21267
|| || || ||||| || ||
Sbjct 169805 ATGAAGTCGAATGGGTTCTC 169824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531591247031920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |