Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq738 246 3e-60 seq2120 96.9 4e-15 seq412 82.4 8e-11 >seq738 Length=407637 Score = 246 bits (272), Expect = 3e-60 Identities = 594/889 (67%), Gaps = 33/889 (4%) Strand=Plus/Plus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||||||||| ||||| || || ||||| || ||||||||||| |||||| ||| Sbjct 114299 TTTTTGATATTCACTCACCCTCTTTTCAAAGAAATTTGTCTTATTAATCAATGAAATATT 114358 Query 21244 TTCCATAAAATCAAATGGATTTTCAG-ATT-TAAATATTTTATTACAACCCAGTTCTGAT 21301 ||||| ||||| || ||||| | | ||| ||||| ||| | || || ||||| | Sbjct 114359 ATCCATGAAATCCAAAGGATTATGAACATTGTAAATCTTTGAATAT--CCAAGTTCAATT 114416 Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361 ||||||||||| || |||||| |||||| | | ||| || ||||||| ||| | Sbjct 114417 AATAATCTATCAGCAACAAATCTTATATAATTAATCATAGATGAGCAATTCAAACCTAAA 114476 Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421 | || || || | | | ||||| ||| | ||| ||| || ||||| ||| Sbjct 114477 ATTTCAACGGGTAATGACTCTGTCAGAAATTCTCCTTCAATATCAACTGCTTCCTGTATT 114536 Query 21422 ATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATC--------- 21472 || | || | ||| || | || ||| | | || |||||| || Sbjct 114537 AT-TGAATAAACCTT--TGAATCAG----ATA-ATTTATGTTTTAAATATTTCCTATATA 114588 Query 21473 --AAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATG 21530 | ||||||||| |||||||| || | ||||| |||||||| | ||||||| || | Sbjct 114589 AGAGACATGCAAATTCACAATGTAAGGCCTCATCTCTACTTATAAGTTCATTACTGAAAG 114648 Query 21531 TTAAACCGGGCATTAATCCT-CTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAA 21589 ||||||| ||||| ||| | | |||||| ||||||||||||| ||||| || || Sbjct 114649 TTAAACCTGGCAT-AATATTACGCTTTTTCAACCAAAATATTGCTGCAAAACTCCCAGAG 114707 Query 21590 AAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 |||||||| || ||||| | ||||| || || ||||| || || | | || | || | Sbjct 114708 AAGAAAATCCCTTCAACCACTGCAAACGCTACCAATCGCTCTGCGAAACTTGAATTTTGA 114767 Query 21650 TCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATA 21709 || |||| |||| | ||||||| || |||||| | | || || || || || || Sbjct 114768 TCATATATATATTTATTTGCCCATATTCCCTTTTTTCTTATTGAAGGGATGGTCTCTATT 114827 Query 21710 GCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTA 21769 || || ||||||||||| || | |||| | |||| ||| Sbjct 114828 GCGTTAAAAAGATGATTCTTCTGATCTGTAGATTCTATGAAAGTTTCTAATAATAAGCTA 114887 Query 21770 TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC- 21828 ||||| || |||||||||||||| || | || ||||| | ||| ||| |||| || || Sbjct 114888 TACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATCTAGCTTCA 114947 Query 21829 -TGAACATTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886 ||| ||| || || |||| |||| || | ||| || ||| || ||| ||| Sbjct 114948 ATGA--TTTGTACTTCTTGAAT-GAATCTTTCAATCAAATTATCACCAACAATTGTATCT 115004 Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT 21946 | ||||||||||| | |||| | |||||||| | ||| | ||| | || Sbjct 115005 GATGAAGCAAAAAATGCAAGAATATGTGATATAAAATGTTTTTCATCTGATGTCAGCTTC 115064 Query 21947 TTCCAATCTAATAA-ATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAAT 22005 ||||||| | ||| ||| || |||| ||| || ||||| || |||||||| || | Sbjct 115065 TTCCAAT-GAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAAAAAGATGCTAC 115123 Query 22006 AGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATT 22054 || | ||||||| | ||| ||||| |||| ||||||||||||| Sbjct 115124 AGATTGTTTATACTTGTACCATATATCGGGGTATAATATTGGAAATATT 115172 >seq2120 Length=154726 Score = 96.9 bits (106), Expect = 4e-15 Identities = 203/293 (69%), Gaps = 10/293 (3%) Strand=Plus/Minus Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 |||||||| || |||||||||||||| || | || ||||| | ||| ||| |||| || Sbjct 146055 CTATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATCTAGCT 145996 Query 21827 TC--TGAACATTGAACCTCG-GAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCA 21883 || ||| ||| || || |||| || || || | ||| || ||| || ||| | Sbjct 145995 TCAATGAT--TTGTACTTCTTGAATGAA-TCTTTCAATCAAATTATCACCAACAATTGTA 145939 Query 21884 TCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT 21943 || | ||||||||||| | |||| | |||||||| | ||| | ||| | Sbjct 145938 TCTGATGAAGCAAAAAATGCAAGAATATGTGATATAAAATGTTTTTCATCTGATGTCAGC 145879 Query 21944 TTTTTCCAATCTAATAA-ATCTTTTGATAAATCTACTTCTTCAGTTGTCCA-AAAGCTAG 22001 || ||||||| | ||| ||| || |||| ||| || ||||| || ||||| |||| | | Sbjct 145878 TTCTTCCAAT-GAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAGAAAGAT-G 145821 Query 22002 CAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATT 22054 | | || | ||||||| | ||| ||||| |||| ||||| ||||||| Sbjct 145820 CTACAGATTGTTTATACTTGTACCATATATCGGGGTATAATATTGAAAATATT 145768 >seq412 Length=567167 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 21128 TAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTT 21187 || ||||||||||| |||| |||||||| || || ||| ||| | ||| || Sbjct 169685 TAGAAATCAGCATCCAATGTAAAAACATTTTCGTCCTTTCGGCTCATGACTCCGGCCTTC 169744 Query 21188 TGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCC 21247 || || || | |||| | |||||||| ||||| ||||||||||||| || || |||| Sbjct 169745 TGGTATTCGCCAACTTTCTTTTCGAAGAAATTCGTCTTTCCTTCCAGAGAAATGTGTTCC 169804 Query 21248 ATAAAATCAAATGGATTTTC 21267 || || || ||||| || || Sbjct 169805 ATGAAGTCGAATGGGTTCTC 169824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531591247031920