Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq738 163 7e-35 seq293 111 4e-19 seq412 93.3 1e-13 >seq738 Length=407637 Score = 163 bits (180), Expect = 7e-35 Identities = 324/467 (69%), Gaps = 16/467 (3%) Strand=Plus/Minus Query 22483 TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTT 22542 ||||| || || | | || ||||| ||||||||||| |||||||| ||||| | ||| Sbjct 114754 TTCGCAGAGCGATTGGTAGCGTTTGCAGTGGTTGAAGGGATTTTCTTCTCTGG-GAGTTT 114696 Query 22543 TG-TGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCA--AAT 22599 || ||||| |||||| | ||||| ||| |||||||| ||| |||| ||||| ||| Sbjct 114695 TGCAGCAATATTTTGGTTGAAAAAGCGTAATATTATGCCAGGTTTAAC--TTTCAGTAAT 114638 Query 22600 GAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAAT 22659 || | || || ||||||||| | ||| || ||||| ||| | ||||| |||| Sbjct 114637 GAACTTATAAGTAGAGATGAGGCCTTACATTGTGAATTTGCATGTCTCTTATATAGGAAA 114578 Query 22660 CATATCATTCATAAACTTCCATATGAAACTGTACTTGAT-ATTATTACA-AATGCAGTTG 22717 || | | |||||| | | || || || || | | || |||| | ||||||| Sbjct 114577 TATTTAAAACATAAATTATCTGATTCAAAGGT--TTATTCAATAATACAGGAAGCAGTTG 114520 Query 22718 AACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGT--AAGTCTCATTGGTATCAATGC 22775 | ||||| | |||| | ||| | ||||| || || | | | ||| | ||| Sbjct 114519 ATATTGAAGGAGAATTTCTGACAGAGTCATTACCCGTTGAAATTT--TAGGTTTGAATTG 114462 Query 22776 CGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTA 22835 | ||| |||| || ||||| | ||||||||| ||| | |||||||| ||| || || Sbjct 114461 CTCATCTATGATTAATTATATAAGATTTGTTGCTGATAGATTATTAATTGAACTTGGATA 114402 Query 22836 TGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGG 22895 | ||||| ||| || || |||||| || || | ||||| ||||||| |||| Sbjct 114401 TTCAAAGATTTACAATGTTCATAATCCTTTGGATTTCATGGATAATATTTCA-TTGATTA 114343 Query 22896 A-AAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCA 22941 | ||||| |||||||| ||||| || || ||||||| |||||| || Sbjct 114342 ATAAGACAAATTTCTTTGAAAAGAGGGTGAGTGAATATCAAAAATCA 114296 >seq293 Length=664131 Score = 111 bits (122), Expect = 4e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 363837 AGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCT 363896 ||| ||||| || || || || ||||| || || || ||| ||||| || || || Sbjct 205713 AGGCGCGTTCGCGATCTACCTGGAGCCGTGGCACGCGGACGTTTACGAGTTCCTGGACCT 205654 Query 363897 CCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGT 363956 ||| ||||| ||||||||||| |||| || || ||| ||||||| ||||| ||||| Sbjct 205653 GAAGAAGAACACTGGAAAAGAGGAGGTGCGAGCTCGCGATTTGTTCTACGCACTGTGGGT 205594 Query 363957 TTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACA 364016 | |||| || ||| || || ||||| | | | ||| ||| | || || || Sbjct 205593 GCCCGACCTGTTCATGCGACGAGTCGAGGCTGACCAAATGTGGAGCCTCATGTGTCCGCA 205534 Query 364017 CGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGA 364052 ||| ||||| ||||| |||||||| |||||||| || Sbjct 205533 CGACTGTCCCGGTCTCTCCGATGTTTGGGGTGAAGA 205498 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 364126 TTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCG 364185 || || ||||| || |||||||||||||| || |||||||| ||| | ||||| || | Sbjct 204110 TTCGCGATCATTGACTCGCAGATTGAGACGGGCACACCCTACATGCTCTACAAGGACGCC 204051 Query 364186 TGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACC 364245 ||||||||||||||||||||| |||| || ||||| || ||||| | || || Sbjct 204050 GCTAACCGCAAGTCCAACCAGCAGAACCTGGGAACAATCAAGTGCAGCAATTTGTGCACA 203991 Query 364246 GAGATTATTGAATACACCGC 364265 ||||| | || ||||| || Sbjct 203990 GAGATCGTCGAGTACACGGC 203971 >seq412 Length=567167 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 22845 TTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAA 22904 ||| ||||| | || ||||| || | ||||||| ||||| || ||||||||||| || Sbjct 169834 TTACAACGTGGAGAACCCATTCGACTTCATGGAACACATTTCTCTGGAAGGAAAGACGAA 169775 Query 22905 TTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 |||||||||||| | |||||| |||||||| || || || || ||| Sbjct 169774 TTTCTTCGAAAAGAAAGTTGGCGAATACCAGAAGGCCGGAGTCATG 169729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302576117808356