Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq1864 116 5e-21 seq649 104 3e-17 seq490 104 3e-17 >seq1864 Length=188450 Score = 116 bits (128), Expect = 5e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 126179 TGGTGTAAATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACT 126238 ||||| | ||||| || ||| ||| | |||||||| |||| ||| |||||||| |||| Sbjct 142256 TGGTGAAGATGTAACGCGGACTTGCGGCGTCCTTGCCGCCCTGCAATCGCGTGCCGAACT 142315 Query 126239 GACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGA 126298 ||||| ||||| ||||| | | |||||| |||||| ||| |||||| | |||| Sbjct 142316 GACCGAGCGGCTGCAACAGGTTGATGTTGTTGCTGCCCACATAGTTCTGCGCCAGGTTGA 142375 Query 126299 CAATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGC 126358 |||||| ||| | ||| ||||| | |||| | | |||||||||||| | | Sbjct 142376 TGATGGTCGACATCAGTGACACCTCACCGTGGTGGTAGGCCGACTGCTCGGCCACCGACC 142435 Query 126359 CGCTCAGCTGCGCAACCTTGAT 126380 || |||||| || |||||||| Sbjct 142436 CGGCCAGCTGGGCCACCTTGAT 142457 >seq649 Length=437485 Score = 104 bits (114), Expect = 3e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 126179 TGGTGTAAATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACT 126238 ||||| | ||||| || ||| ||| | |||||||| |||| || |||||||| |||| Sbjct 394661 TGGTGAAGATGTAACGCGGACTTGCGGCGTCCTTGCCGCCCTGCAGTCGCGTGCCGAACT 394602 Query 126239 GACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGA 126298 ||||| ||||| ||||| | | |||||| ||||| ||| ||||| | |||| Sbjct 394601 GACCGAGCGGCTGCAACAGGTTGATGTTGTTGCTGCCCACGTAGTTTTGCGCCAGGTTGA 394542 Query 126299 CAATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGC 126358 |||||| ||| | ||| ||||| | |||| | | |||||||||||| | | Sbjct 394541 TGATGGTCGACATCAGTGACACCTCACCGTGGTGGTAGGCCGACTGCTCGGCCACCGACC 394482 Query 126359 CGCTCAGCTGCGCAACCTTGAT 126380 || |||||| || |||||||| Sbjct 394481 CGGCCAGCTGGGCCACCTTGAT 394460 >seq490 Length=515312 Score = 104 bits (114), Expect = 3e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 126179 TGGTGTAAATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACT 126238 ||||| | ||||| || ||| ||| | |||||||| |||| || |||||||| |||| Sbjct 446772 TGGTGAAGATGTAACGTGGACTTGCGGCGTCCTTGCCGCCCTGCAGTCGCGTGCCGAACT 446831 Query 126239 GACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGA 126298 ||||| ||||| ||||| | | |||||| ||||| ||| ||||| | |||| Sbjct 446832 GACCGAGCGGCTGCAACAGGTTGATGTTGTTGCTGCCCACGTAGTTTTGCGCCAGGTTGA 446891 Query 126299 CAATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGC 126358 |||||| ||| | ||| ||||| | |||| | | |||||||||||| | | Sbjct 446892 TGATGGTCGACATCAGTGACACCTCACCGTGGTGGTAGGCCGACTGCTCGGCCACCGACC 446951 Query 126359 CGCTCAGCTGCGCAACCTTGAT 126380 || |||||| || |||||||| Sbjct 446952 CGGCCAGCTGGGCCACCTTGAT 446973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611036185140800