Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq738 215 6e-51 seq2120 145 8e-30 seq660 131 2e-25 seq746 129 7e-25 seq348 127 2e-24 seq412 105 7e-18 >seq738 Length=407637 Score = 215 bits (238), Expect = 6e-51 Identities = 404/585 (69%), Gaps = 14/585 (2%) Strand=Plus/Plus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||| || |||||| | || |||| ||| | ||||| ||||| |||||| Sbjct 114594 CATGCAAATTCACAATGTAAGGCCTCATCTCTACTTATAAGTTCATTACTGAAAGTTAAA 114653 Query 93152 CCTGG--TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209 ||||| ||| | | | | ||| | | ||||||||||| |||||||| ||||| || | Sbjct 114654 CCTGGCATAATATTACGCTTTT--TCAACCAAAATATTGCTGCAAAACTCCCAGAGAAGA 114711 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGC 93269 | || ||||| || ||||||| || || | || || || ||| ||| |||| || Sbjct 114712 AAATCCCTTCAACCACTGCAAACGCTACCAATCGCTCTGCGAAACTTG---AATTT-TGA 114767 Query 93270 TGATCCAT---TTTAAA-GCCCA-ATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGAT 93324 | || || |||| ||||| || ||||||||||| | |||| | || || || Sbjct 114768 TCATATATATATTTATTTGCCCATATTCCCTTTTTTCTTATTG-AAGGGATGGTCTCTAT 114826 Query 93325 AGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGA 93384 |||||||| || | || || || | | | |||| | || || | ||| | Sbjct 114827 TGCGTTAAAAAGATGATTCTTCTGATCTGTAGATTCTATGAAAGTTTCTAATAATAAGCT 114886 Query 93385 ATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTC 93444 |||||| || ||||| | ||| ||||| | | ||| || | ||||||| |||||||||| Sbjct 114887 ATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATCTAGCTTC 114946 Query 93445 CGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGA 93504 |||| || ||||||||| ||||| || | | ||| ||| || || ||| || Sbjct 114947 AATGATTTGTACTTCTTGAATGAATCTTTCAATCAAATTATCACCAACAATTGTATCTGA 115006 Query 93505 TGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATC 93564 || |||||||| || | ||||| |||||||||||| ||||| | | ||||| | Sbjct 115007 TGAAGCAAAAAATGCAAGAATATGTGATATAAAATGTTTTTCATCTGATGTCAGCTTCTT 115066 Query 93565 CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 ||||| | | ||| || || |||||||| ||||| |||||||| |||||| | | Sbjct 115067 CCAATGAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAAAAAGATGCTACAGA 115126 Query 93625 TTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 || ||| ||| | | |||||| || | ||| ||||||||||| Sbjct 115127 TTGTTTATACTTGTACCATATATCGGGGTATAATATTGGAAATAT 115171 >seq2120 Length=154726 Score = 145 bits (160), Expect = 8e-30 Identities = 203/285 (71%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 93385 ATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTC 93444 |||||| || ||||| | ||| ||||| | | ||| || | ||||||| |||||||||| Sbjct 146053 ATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATCTAGCTTC 145994 Query 93445 CGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGA 93504 |||| || ||||||||| ||||| || | | ||| ||| || || ||| || Sbjct 145993 AATGATTTGTACTTCTTGAATGAATCTTTCAATCAAATTATCACCAACAATTGTATCTGA 145934 Query 93505 TGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATC 93564 || |||||||| || | ||||| |||||||||||| ||||| | | ||||| | Sbjct 145933 TGAAGCAAAAAATGCAAGAATATGTGATATAAAATGTTTTTCATCTGATGTCAGCTTCTT 145874 Query 93565 CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 ||||| | | ||| || || |||||||| ||||| ||||| || |||||| | | Sbjct 145873 CCAATGAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAGAAAGATGCTACAGA 145814 Query 93625 TTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 || ||| ||| | | |||||| || | ||| |||| |||||| Sbjct 145813 TTGTTTATACTTGTACCATATATCGGGGTATAATATTGAAAATAT 145769 >seq660 Length=432788 Score = 131 bits (144), Expect = 2e-25 Identities = 80/84 (95%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| Sbjct 57576 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGGTTGGGAGCG 57635 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 57636 TGGGTTCGAACCCCACACCTGACA 57659 >seq746 Length=406393 Score = 129 bits (142), Expect = 7e-25 Identities = 82/88 (93%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| ||||||| | ||| |||| Sbjct 357268 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCCCTGGTTCTCATTCGAGAGC 357327 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||||||||||||||| Sbjct 357328 GTGGGTTCGAACCCCACACCTGACAAAT 357355 >seq348 Length=617325 Score = 127 bits (140), Expect = 2e-24 Identities = 79/84 (94%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| Sbjct 195038 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGGTTGGGAGCG 194979 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||||| |||||||||||||| Sbjct 194978 TGGGTTCGATCCCCACACCTGACA 194955 >seq412 Length=567167 Score = 105 bits (116), Expect = 7e-18 Identities = 161/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 93106 ATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCC 93165 ||||| |||| | || || || || | |||||||||||| || | ||| || | || || Sbjct 173405 ATGTATACCT-CATCGCGCGAAATAAGCTCATTGCTGAAGGTGAGACCAGGCATGAGACC 173463 Query 93166 TCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGC 93225 || ||||| ||||| ||||| || ||||| || || || || || || || || ||||| Sbjct 173464 ACGCTTCTTAAGCCAGAATATGGACGCAAAGCTGCCCGAGAAGAAGATGCCCTCAACGGC 173523 Query 93226 TGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGC 93285 || || ||||||| || ||| | || | || | | ||| |||||| | || || Sbjct 173524 GGCGAACGCCACAACTCGCTCGCCGAACGTGGCCGTTTGGCTGGCGATCCACTGCAACGC 173583 Query 93286 CCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 ||| || || || |||||| ||| || | ||| ||| | || || || Sbjct 173584 CCAGTCCGCCTTCCTCTTAACACACGGCATTGTCTCGGTCGCCTTGAA 173631 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/116 (77%), Gaps = 3/116 (3%) Strand=Plus/Plus Query 92743 TAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACAT 92802 |||||||| ||||| | |||||| ||||| || || ||| | ||| || || Sbjct 169685 TAGAAATCAGCATCCAATGTAAAAACATTTTC--GTCCTTTCGGCT-CATGACTCCGGCC 169741 Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATAT 92858 || |||||||| |||||||| ||||| |||||||| ||||||||||||| ||| || Sbjct 169742 TTCTGGTATTCGCCAACTTTCTTTTCGAAGAAATTCGTCTTTCCTTCCAGAGAAAT 169797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556536720935920