Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq738 215 6e-51
seq2120 145 8e-30
seq660 131 2e-25
seq746 129 7e-25
seq348 127 2e-24
seq412 105 7e-18
>seq738
Length=407637
Score = 215 bits (238), Expect = 6e-51
Identities = 404/585 (69%), Gaps = 14/585 (2%)
Strand=Plus/Plus
Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151
|| ||||| || |||||| | || |||| ||| | ||||| ||||| ||||||
Sbjct 114594 CATGCAAATTCACAATGTAAGGCCTCATCTCTACTTATAAGTTCATTACTGAAAGTTAAA 114653
Query 93152 CCTGG--TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209
||||| ||| | | | | ||| | | ||||||||||| |||||||| ||||| || |
Sbjct 114654 CCTGGCATAATATTACGCTTTT--TCAACCAAAATATTGCTGCAAAACTCCCAGAGAAGA 114711
Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGC 93269
| || ||||| || ||||||| || || | || || || ||| ||| |||| ||
Sbjct 114712 AAATCCCTTCAACCACTGCAAACGCTACCAATCGCTCTGCGAAACTTG---AATTT-TGA 114767
Query 93270 TGATCCAT---TTTAAA-GCCCA-ATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGAT 93324
| || || |||| ||||| || ||||||||||| | |||| | || || ||
Sbjct 114768 TCATATATATATTTATTTGCCCATATTCCCTTTTTTCTTATTG-AAGGGATGGTCTCTAT 114826
Query 93325 AGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGA 93384
|||||||| || | || || || | | | |||| | || || | ||| |
Sbjct 114827 TGCGTTAAAAAGATGATTCTTCTGATCTGTAGATTCTATGAAAGTTTCTAATAATAAGCT 114886
Query 93385 ATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTC 93444
|||||| || ||||| | ||| ||||| | | ||| || | ||||||| ||||||||||
Sbjct 114887 ATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATCTAGCTTC 114946
Query 93445 CGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGA 93504
|||| || ||||||||| ||||| || | | ||| ||| || || ||| ||
Sbjct 114947 AATGATTTGTACTTCTTGAATGAATCTTTCAATCAAATTATCACCAACAATTGTATCTGA 115006
Query 93505 TGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATC 93564
|| |||||||| || | ||||| |||||||||||| ||||| | | ||||| |
Sbjct 115007 TGAAGCAAAAAATGCAAGAATATGTGATATAAAATGTTTTTCATCTGATGTCAGCTTCTT 115066
Query 93565 CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624
||||| | | ||| || || |||||||| ||||| |||||||| |||||| | |
Sbjct 115067 CCAATGAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAAAAAGATGCTACAGA 115126
Query 93625 TTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669
|| ||| ||| | | |||||| || | ||| |||||||||||
Sbjct 115127 TTGTTTATACTTGTACCATATATCGGGGTATAATATTGGAAATAT 115171
>seq2120
Length=154726
Score = 145 bits (160), Expect = 8e-30
Identities = 203/285 (71%), Gaps = 0/285 (0%)
Strand=Plus/Minus
Query 93385 ATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTC 93444
|||||| || ||||| | ||| ||||| | | ||| || | ||||||| ||||||||||
Sbjct 146053 ATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATCTAGCTTC 145994
Query 93445 CGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGA 93504
|||| || ||||||||| ||||| || | | ||| ||| || || ||| ||
Sbjct 145993 AATGATTTGTACTTCTTGAATGAATCTTTCAATCAAATTATCACCAACAATTGTATCTGA 145934
Query 93505 TGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATC 93564
|| |||||||| || | ||||| |||||||||||| ||||| | | ||||| |
Sbjct 145933 TGAAGCAAAAAATGCAAGAATATGTGATATAAAATGTTTTTCATCTGATGTCAGCTTCTT 145874
Query 93565 CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624
||||| | | ||| || || |||||||| ||||| ||||| || |||||| | |
Sbjct 145873 CCAATGAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAGAAAGATGCTACAGA 145814
Query 93625 TTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669
|| ||| ||| | | |||||| || | ||| |||| ||||||
Sbjct 145813 TTGTTTATACTTGTACCATATATCGGGGTATAATATTGAAAATAT 145769
>seq660
Length=432788
Score = 131 bits (144), Expect = 2e-25
Identities = 80/84 (95%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323
|||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||
Sbjct 57576 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGGTTGGGAGCG 57635
Query 126324 TGGGTTCGAACCCCACACCTGACA 126347
||||||||||||||||||||||||
Sbjct 57636 TGGGTTCGAACCCCACACCTGACA 57659
>seq746
Length=406393
Score = 129 bits (142), Expect = 7e-25
Identities = 82/88 (93%), Gaps = 2/88 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
||||||||||||||||||||||||||||||||||||||| ||||||| | ||| ||||
Sbjct 357268 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCCCTGGTTCTCATTCGAGAGC 357327
Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350
||||||||||||||||||||||||||||
Sbjct 357328 GTGGGTTCGAACCCCACACCTGACAAAT 357355
>seq348
Length=617325
Score = 127 bits (140), Expect = 2e-24
Identities = 79/84 (94%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323
|||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||
Sbjct 195038 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGGTTGGGAGCG 194979
Query 126324 TGGGTTCGAACCCCACACCTGACA 126347
||||||||| ||||||||||||||
Sbjct 194978 TGGGTTCGATCCCCACACCTGACA 194955
>seq412
Length=567167
Score = 105 bits (116), Expect = 7e-18
Identities = 161/228 (71%), Gaps = 1/228 (0%)
Strand=Plus/Plus
Query 93106 ATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCC 93165
||||| |||| | || || || || | |||||||||||| || | ||| || | || ||
Sbjct 173405 ATGTATACCT-CATCGCGCGAAATAAGCTCATTGCTGAAGGTGAGACCAGGCATGAGACC 173463
Query 93166 TCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGC 93225
|| ||||| ||||| ||||| || ||||| || || || || || || || || |||||
Sbjct 173464 ACGCTTCTTAAGCCAGAATATGGACGCAAAGCTGCCCGAGAAGAAGATGCCCTCAACGGC 173523
Query 93226 TGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGC 93285
|| || ||||||| || ||| | || | || | | ||| |||||| | || ||
Sbjct 173524 GGCGAACGCCACAACTCGCTCGCCGAACGTGGCCGTTTGGCTGGCGATCCACTGCAACGC 173583
Query 93286 CCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333
||| || || || |||||| ||| || | ||| ||| | || || ||
Sbjct 173584 CCAGTCCGCCTTCCTCTTAACACACGGCATTGTCTCGGTCGCCTTGAA 173631
Score = 82.4 bits (90), Expect = 8e-11
Identities = 89/116 (77%), Gaps = 3/116 (3%)
Strand=Plus/Plus
Query 92743 TAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACAT 92802
|||||||| ||||| | |||||| ||||| || || ||| | ||| || ||
Sbjct 169685 TAGAAATCAGCATCCAATGTAAAAACATTTTC--GTCCTTTCGGCT-CATGACTCCGGCC 169741
Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATAT 92858
|| |||||||| |||||||| ||||| |||||||| ||||||||||||| ||| ||
Sbjct 169742 TTCTGGTATTCGCCAACTTTCTTTTCGAAGAAATTCGTCTTTCCTTCCAGAGAAAT 169797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556536720935920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |