Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1095 107 1e-18 >seq1095 Length=312686 Score = 107 bits (118), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| || || || |||||||| ||| ||||| ||| | || Sbjct 81817 ATGCAGATTTTTGTCAAAACCTTGACTGGAAAAACCATCACCCTGGAAGTTGAACCTTCA 81876 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || || ||||| || || | || |||| Sbjct 81877 GATACTATTGAGAATGTCAAGGCTAAGATCCAAGATAAGGAAGGAATTCCACCCGACCAG 81936 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT--TTAAAAACTATGGCCGATTACA 22011 |||||||||||||| ||||| || ||||| |||||| | || ||||| | || |||| Sbjct 81937 CAGAGACTTATCTTCGCTGGAAAGCAACTGGAAGATGGTAGAACACTAT--CAGACTACA 81994 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||||||||||| ||||| |||| | || | || |||||| Sbjct 81995 ATATTCAGAAGGAATCTACACTTCACTTGGTGCTGCGACTCCGTGGAGGA 82044 Score = 107 bits (118), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| || || || |||||||| ||| ||||| ||| | || Sbjct 88638 ATGCAGATTTTTGTCAAAACCTTGACTGGAAAAACCATCACCCTGGAAGTTGAACCTTCA 88697 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || || ||||| || || | || |||| Sbjct 88698 GATACTATTGAGAATGTCAAGGCTAAGATCCAAGATAAGGAAGGAATTCCACCCGACCAG 88757 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT--TTAAAAACTATGGCCGATTACA 22011 |||||||||||||| ||||| || ||||| |||||| | || ||||| | || |||| Sbjct 88758 CAGAGACTTATCTTCGCTGGAAAGCAACTGGAAGATGGTAGAACACTAT--CAGACTACA 88815 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||||||||||| ||||| |||| | || | || |||||| Sbjct 88816 ATATTCAGAAGGAATCTACACTTCACTTGGTGCTGCGACTCCGTGGAGGA 88865 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| ||||| | ||||| || || || || |||||||| |||| ||| || || Sbjct 81361 ATGCAGATATTCGTGAAAACGTTGACAGGAAAGACCATTACATTGGAGGTGGAGCCCTCA 81420 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || ||| | | || | ||| || ||| ||||| || || | ||||| || Sbjct 81421 GACACGATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAAGGAATCCCACCTG---AC 81477 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||| | || || || ||||| ||||| || || ||| | || || | || ||| Sbjct 81478 CAGCAGCGCCTCATTTTCGCTGGTAAACAGCTGGAGGATGGCAGGACATTGTCAGACTAC 81537 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| ||||| ||||| ||| | || || ||| | || || || Sbjct 81538 AATATTCAGAAAGAATCCACTCTCCATCTTGTGTTGCGTCTCCGTGGTGG 81587 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| ||||| | ||||| || || || || |||||||| |||| ||| || || Sbjct 88182 ATGCAGATATTCGTGAAAACGTTGACAGGAAAGACCATTACATTGGAGGTGGAGCCCTCA 88241 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || ||| | | || | ||| || ||| ||||| || || | ||||| || Sbjct 88242 GACACGATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAAGGAATCCCACCTG---AC 88298 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||| | || || || ||||| ||||| || || ||| | || || | || ||| Sbjct 88299 CAGCAGCGCCTCATTTTCGCTGGTAAACAGCTGGAGGATGGCAGGACATTGTCAGACTAC 88358 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| ||||| ||||| ||| | || || ||| | || || || Sbjct 88359 AATATTCAGAAAGAATCCACTCTCCATCTTGTGTTGCGTCTCCGTGGTGG 88408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357921590811532