Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq412 143 5e-29
seq293 107 4e-18
>seq412
Length=567167
Score = 143 bits (158), Expect = 5e-29
Identities = 152/195 (78%), Gaps = 4/195 (2%)
Strand=Plus/Minus
Query 42611 GTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTG 42670
||||||||| | ||||| ||||| || | |||| |||||||||||||||| | | ||
Sbjct 173632 GTTCAAGGCGACCGAGACAATGCCGTGTGTTAAGAGGAAGGCGGACTGGGCGTTGCAGTG 173573
Query 42671 GATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGG 42729
||||| || || ||| | |||||||||||| | | || || || ||||||| ||||
Sbjct 173572 GATCGCCAG-CCAAACGGCCACGTTCGGCGAGCGAGTTGTGGCGTTCGCCGCCGTTGAGG 173514
Query 42730 GCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATG 42788
||||||||||||||||| ||| || ||||| |||||||| ||| || ||| || |||
Sbjct 173513 GCATCTTCTTCTCGGGCAGCTTTGCGTCCATATTCTGGCTTAAGAAGCGTGGTCTC-ATG 173455
Query 42789 CCCGGACTCACCTTC 42803
|| || |||||||||
Sbjct 173454 CCTGGTCTCACCTTC 173440
>seq293
Length=664131
Score = 107 bits (118), Expect = 4e-18
Identities = 156/216 (72%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 244321 CCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT 244380
||||||||||||||| | ||| | |||||| |||||| || || || ||||| ||
Sbjct 201144 CCCCTTGCTGACGGGACAGCCGGCATAGGTCTCGTAGGGCCCATCTCGGGCGGCCAACTC 201203
Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCA--TGTCG 244438
|||||| | || | |||| | ||||||||||||||||| | | | ||| | || |
Sbjct 201204 ACAGCTGGCCTCCAAGGCGCCATAGTAGATGGTCTCGAACAGCTGTTGGTTGAGCAGTTG 201263
Query 244439 CGGGCCTTGCCGCAGGTGAAGGGGATGCC-CATCATCATGAAGACGTCGGCCAGTCCCTG 244497
|| ||| ||| ||| || |||| ||||| ||||| | |||||||| |||||
Sbjct 201264 CGACGCTT--CGCTCTCGAA-CGGCTGCCGCATCAGGATGAACAGGTCGGCCAAACCCTG 201320
Query 244498 CACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533
| |||||||||||| || | ||| ||| |||| ||
Sbjct 201321 GATGCCGATGCCGATCGGCCGGTGACGCATGTTCGA 201356
Score = 102 bits (112), Expect = 2e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780
||||||| ||| ||||| ||||| | || ||||||||||| || ||||||| ||| ||
Sbjct 203974 GTGTACTCGACGATCTCTGTGCACAAATTGCTGCACTTGATTGTTCCCAGGTTCTGCTGG 204033
Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTG 244839
||||||||| ||| ||||||||||||||||||| |||| || ||||| | |||
Sbjct 204034 TTGGACTTGCGGTTAGCGGCGTCCTTGTAGAGCATGTAGGGTGTGCCCGTCTCAATCTG 204092
Score = 89.7 bits (98), Expect = 1e-12
Identities = 167/243 (69%), Gaps = 2/243 (1%)
Strand=Plus/Plus
Query 244912 GGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGC-CG 244970
|||||| || |||||| || ||||| || ||| || ||||| || | || ||
Sbjct 205479 GGTGTAGAGTTTCTCGAATTCTTCACCCCAAACATCGGAGAGACCGGGACA-GTCGTGCG 205537
Query 244971 GGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCC 245030
| |||||||| |||||| | | ||| ||| | ||||||| |||||||| | ||
Sbjct 205538 GACACATGAGGCTCCACATTTGGTCAGCCTCGACTCGTCGCATGAACAGGTCGGGCACCC 205597
Query 245031 AGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCT 245090
| || || | ||| | || | | | | ||| || |||||||||||| |||| |
Sbjct 205598 ACAGTGCGTAGAACAAATCGCGAGCTCGCACCTCCTCTTTTCCAGTGTTCTTCTTCAGGT 205657
Query 245091 CCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCC 245150
||| || || | ||||| ||||||| ||||||| ||||| |||| ||||| || |
Sbjct 205658 CCAGGAACTCGTAAACGTCCGCGTGCCACGGCTCCAGGTAGATCGCGAACGCGCCTGGAC 205717
Query 245151 GCT 245153
|||
Sbjct 205718 GCT 205720
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 943789618194080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |