Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq412 143 5e-29 seq293 107 4e-18 >seq412 Length=567167 Score = 143 bits (158), Expect = 5e-29 Identities = 152/195 (78%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 42611 GTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTG 42670 ||||||||| | ||||| ||||| || | |||| |||||||||||||||| | | || Sbjct 173632 GTTCAAGGCGACCGAGACAATGCCGTGTGTTAAGAGGAAGGCGGACTGGGCGTTGCAGTG 173573 Query 42671 GATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGG 42729 ||||| || || ||| | |||||||||||| | | || || || ||||||| |||| Sbjct 173572 GATCGCCAG-CCAAACGGCCACGTTCGGCGAGCGAGTTGTGGCGTTCGCCGCCGTTGAGG 173514 Query 42730 GCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATG 42788 ||||||||||||||||| ||| || ||||| |||||||| ||| || ||| || ||| Sbjct 173513 GCATCTTCTTCTCGGGCAGCTTTGCGTCCATATTCTGGCTTAAGAAGCGTGGTCTC-ATG 173455 Query 42789 CCCGGACTCACCTTC 42803 || || ||||||||| Sbjct 173454 CCTGGTCTCACCTTC 173440 >seq293 Length=664131 Score = 107 bits (118), Expect = 4e-18 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 244321 CCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT 244380 ||||||||||||||| | ||| | |||||| |||||| || || || ||||| || Sbjct 201144 CCCCTTGCTGACGGGACAGCCGGCATAGGTCTCGTAGGGCCCATCTCGGGCGGCCAACTC 201203 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCA--TGTCG 244438 |||||| | || | |||| | ||||||||||||||||| | | | ||| | || | Sbjct 201204 ACAGCTGGCCTCCAAGGCGCCATAGTAGATGGTCTCGAACAGCTGTTGGTTGAGCAGTTG 201263 Query 244439 CGGGCCTTGCCGCAGGTGAAGGGGATGCC-CATCATCATGAAGACGTCGGCCAGTCCCTG 244497 || ||| ||| ||| || |||| ||||| ||||| | |||||||| ||||| Sbjct 201264 CGACGCTT--CGCTCTCGAA-CGGCTGCCGCATCAGGATGAACAGGTCGGCCAAACCCTG 201320 Query 244498 CACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 | |||||||||||| || | ||| ||| |||| || Sbjct 201321 GATGCCGATGCCGATCGGCCGGTGACGCATGTTCGA 201356 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| ||| ||||| ||||| | || ||||||||||| || ||||||| ||| || Sbjct 203974 GTGTACTCGACGATCTCTGTGCACAAATTGCTGCACTTGATTGTTCCCAGGTTCTGCTGG 204033 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTG 244839 ||||||||| ||| ||||||||||||||||||| |||| || ||||| | ||| Sbjct 204034 TTGGACTTGCGGTTAGCGGCGTCCTTGTAGAGCATGTAGGGTGTGCCCGTCTCAATCTG 204092 Score = 89.7 bits (98), Expect = 1e-12 Identities = 167/243 (69%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 244912 GGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGC-CG 244970 |||||| || |||||| || ||||| || ||| || ||||| || | || || Sbjct 205479 GGTGTAGAGTTTCTCGAATTCTTCACCCCAAACATCGGAGAGACCGGGACA-GTCGTGCG 205537 Query 244971 GGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCC 245030 | |||||||| |||||| | | ||| ||| | ||||||| |||||||| | || Sbjct 205538 GACACATGAGGCTCCACATTTGGTCAGCCTCGACTCGTCGCATGAACAGGTCGGGCACCC 205597 Query 245031 AGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCT 245090 | || || | ||| | || | | | | ||| || |||||||||||| |||| | Sbjct 205598 ACAGTGCGTAGAACAAATCGCGAGCTCGCACCTCCTCTTTTCCAGTGTTCTTCTTCAGGT 205657 Query 245091 CCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCC 245150 ||| || || | ||||| ||||||| ||||||| ||||| |||| ||||| || | Sbjct 205658 CCAGGAACTCGTAAACGTCCGCGTGCCACGGCTCCAGGTAGATCGCGAACGCGCCTGGAC 205717 Query 245151 GCT 245153 ||| Sbjct 205718 GCT 205720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943789618194080