Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_009237.1 Length=37446 Score E Sequences producing significant alignments: (Bits) Value seq3221 107 5e-19 >seq3221 Length=74604 Score = 107 bits (118), Expect = 5e-19 Identities = 264/396 (67%), Gaps = 11/396 (3%) Strand=Plus/Minus Query 30872 GCTGCGCGCAATTCACGGCTCGTCATGCGATCGATGTCGTCGAGGGTCATCCCCGCTACA 30931 || || || ||||| || || ||| || || | ||| || || |||| || || | Sbjct 56940 GCCGCCCGTAATTCCCGTACCGACATCCGGTCAACGTCATCTAGCGTCAATCCGGCGATG 56881 Query 30932 GTGCCGCCGTCCGCAAGCGCCGCAAGGTCTTCGTCGTCTTCGGCGACCAGTTCGAAAAGT 30991 |||||||| || || | | | || || || || | ||| | | | ||| ||||| Sbjct 56880 GTGCCGCCTTCGGCTAAAACATCTAGATCCTCATCATTTTCAGTTAATAATTCATAAAGT 56821 Query 30992 TTGGTTTTGCCCAAAACGGACAGCGCTGTCCGTTTTGA--CTCCAGCGC---TGGCGACA 31046 || | ||| || |||||| | || || ||||||| || || | | | | | Sbjct 56820 TTAGCTTTTCCTAAAACGCCTAACGTTGCGCGTTTTGGGGCTTCAATTCCATTACCTAAA 56761 Query 31047 TGAACTTGACCGATGCCGCCATCATTCGACGCGCGGT--GCGTTCGTTCAGCCCGAGCTG 31104 ||||| | |||| |||||||| || || || ||| | | ||||| | | Sbjct 56760 --AACTTTAGGCTTGCCTGCATCATTCTGCGAGCTGTTTGCGGTA--TAAGCCCTAAATC 56705 Query 31105 GTGTTCGACGATCTCTGTGAATTCGCCGTGCGGTTCGTTTTCCTTCAGCAGGATCAGGCG 31164 | ||| | ||| | ||| ||||| || || ||||| || || || || | ||||| || Sbjct 56704 CTTTTCAAGGATTTTTGTAAATTCCCCATGAGGTTCATTCTCTTTAAGAATAATCAGCCG 56645 Query 31165 CTTCCCGGCTTCCAGCATGGCTTCGGCAGATTGCGCCATGTAGAAGCGCGCTTCGTTCAC 31224 ||||||||| |||||||| || |||||| ||||||||| |||||||||||||| | ||| Sbjct 56644 CTTCCCGGCCTCCAGCATCGCCTCGGCACTTTGCGCCATATAGAAGCGCGCTTCATGCAC 56585 Query 31225 GACACGATGGCGTTCGTACGGCAAACCATCGCCAAA 31260 | || | | || || || | ||||| ||||| Sbjct 56584 AATGCGTTCCCTCTCATAGGGTAGCCCATCCCCAAA 56549 Score = 98.7 bits (108), Expect = 2e-16 Identities = 259/391 (66%), Gaps = 11/391 (3%) Strand=Plus/Plus Query 30874 TGCGCGCAATTCACGGCTCGTCATGCGATCGATGTCGTCGAGGGTCATCCCCGCTACAGT 30933 |||||||| ||| || || ||| | || | ||| || ||||| || || | ||| Sbjct 55577 TGCGCGCAGTTCTCGTACCGACATCCTGTCAACCTCGGTCAGTGTCATACCAGCAATAGT 55636 Query 30934 GCCGCCGTCCGCAAGCGCCGCAAGGTCTTCGTCGTCTTCGGCGACCAGTTCGAAAAGTTT 30993 |||||| || || | | | || || || || | ||| | | | ||| ||||||| Sbjct 55637 GCCGCCTTCGGCTAAAACATCTAGATCCTCATCATTTTCAGTTAATAATTCATAAAGTTT 55696 Query 30994 GGTTTTGCCCAAAACGGACAGCGCTGTCCGTTTTGA--CTCCAGCGC---TGGCGACATG 31048 | ||| ||||||||| | || || ||||||| || || | | | | | Sbjct 55697 AGCTTTTCCCAAAACGCCTAACGTTGCGCGTTTTGGGGCTTCAATTCCATTACCTAAA-- 55754 Query 31049 AACTTGACCGATGCCGCCATCATTCGACGCGCGGT--GCGTTCGTTCAGCCCGAGCTGGT 31106 ||||| | |||| |||||||| || || || ||| | | ||||| | | | Sbjct 55755 AACTTTAGGCTTGCCTGCATCATTCTGCGAGCTGTTTGCGGTA--TAAGCCCTAAATCCT 55812 Query 31107 GTTCGACGATCTCTGTGAATTCGCCGTGCGGTTCGTTTTCCTTCAGCAGGATCAGGCGCT 31166 ||| | ||| | ||| ||||| || || ||||| || || || || | || || |||| Sbjct 55813 TTTCAAGGATTTTTGTAAATTCCCCATGAGGTTCATTCTCTTTAAGAATAATGAGTCGCT 55872 Query 31167 TCCCGGCTTCCAGCATGGCTTCGGCAGATTGCGCCATGTAGAAGCGCGCTTCGTTCACGA 31226 |||| || || |||||||||||||| || ||||| ||||||||||| || | ||| | Sbjct 55873 TCCCCGCCTCAAGCATGGCTTCGGCGCTCTGTGCCATATAGAAGCGCGCCTCATGCACAA 55932 Query 31227 CACGATGGCGTTCGTACGGCAAACCATCGCC 31257 || | ||| | || ||||| || ||||| Sbjct 55933 TGCGCTCGCGCTGATAGGGCAAGCCCTCGCC 55963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119639417616768