Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq986 89.7 5e-13 seq3617 86.0 6e-12 >seq986 Length=341358 Score = 89.7 bits (98), Expect = 5e-13 Identities = 186/269 (69%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 |||||||| |||||||||| |||| ||||||| |||| | | || ||||| || Sbjct 236056 CCCATGTCGGCCGACCTCTGGTACATCTGACAGCTGAGCTGGTTGCCGGCCACATAGAAC 235997 Query 20366 TGACATAACA-AGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGG-GTTCCACG 20423 || || | | ||||||||||||| ||||||||| | | || ||| || |||||| | Sbjct 235996 TG-CACGAGACAGTGACAGGGCGGCAGCGCCATCTTGGTTAGGT-CGCTGGCGTTCCATG 235939 Query 20424 CACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGT-ACGAC 20482 | ||||| ||||| | || |||| |||||| | | || | | || ||| | Sbjct 235938 CGCACATGATGATGCGCCTGTCGTCCGGATTGGTGGTGATCTTGGTGATGACGTCACG-C 235880 Query 20483 AATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAG 20542 || ||||| | ||||| ||||||| | | |||| |||| | || |||||| Sbjct 235879 AACTGGTCGACACCCTGCGACCTATAGTCGGTGAACATGTCCTTGTACTCGGCTCCAAAG 235820 Query 20543 TGCCTCCACTGGAAACCGTAAACAGGTCC 20571 || | |||||| || |||||||| || || Sbjct 235819 TGACGCCACTGAAAGCCGTAAACTGGGCC 235791 >seq3617 Length=57851 Score = 86.0 bits (94), Expect = 6e-12 Identities = 185/269 (69%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 |||||||| |||||||||| |||| ||||||| |||| | | || ||||| || Sbjct 12120 CCCATGTCGGCCGACCTCTGGTACATCTGACAGCTGAGCTGGTTGCCGGCCACATAGAAC 12061 Query 20366 TGACATAACA-AGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGG-GTTCCACG 20423 || || | | ||||||||||||| ||||||||| | | || ||| || |||||| | Sbjct 12060 TG-CACGAGACAGTGACAGGGCGGCAGCGCCATCTTGGTTAGGT-CGCTGGCGTTCCATG 12003 Query 20424 CACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGT-ACGAC 20482 | ||||| ||||| | || |||| |||||| | | || | | || ||| | Sbjct 12002 CGCACATGATGATGCGCCTGTCGTCCGGATTGGTGGTGATCTTGGTGATGACGTCACG-C 11944 Query 20483 AATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAG 20542 | ||||| | ||||| ||||||| | | |||| |||| | || |||||| Sbjct 11943 AGCTGGTCGACACCCTGCGACCTATAGTCGGTGAACATGTCCTTGTACTCGGCTCCAAAG 11884 Query 20543 TGCCTCCACTGGAAACCGTAAACAGGTCC 20571 || | |||||| || |||||||| || || Sbjct 11883 TGACGCCACTGAAAGCCGTAAACTGGGCC 11855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441115932064720