Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq986 89.7 5e-13
seq3617 86.0 6e-12
>seq986
Length=341358
Score = 89.7 bits (98), Expect = 5e-13
Identities = 186/269 (69%), Gaps = 6/269 (2%)
Strand=Plus/Minus
Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365
|||||||| |||||||||| |||| ||||||| |||| | | || ||||| ||
Sbjct 236056 CCCATGTCGGCCGACCTCTGGTACATCTGACAGCTGAGCTGGTTGCCGGCCACATAGAAC 235997
Query 20366 TGACATAACA-AGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGG-GTTCCACG 20423
|| || | | ||||||||||||| ||||||||| | | || ||| || |||||| |
Sbjct 235996 TG-CACGAGACAGTGACAGGGCGGCAGCGCCATCTTGGTTAGGT-CGCTGGCGTTCCATG 235939
Query 20424 CACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGT-ACGAC 20482
| ||||| ||||| | || |||| |||||| | | || | | || ||| |
Sbjct 235938 CGCACATGATGATGCGCCTGTCGTCCGGATTGGTGGTGATCTTGGTGATGACGTCACG-C 235880
Query 20483 AATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAG 20542
|| ||||| | ||||| ||||||| | | |||| |||| | || ||||||
Sbjct 235879 AACTGGTCGACACCCTGCGACCTATAGTCGGTGAACATGTCCTTGTACTCGGCTCCAAAG 235820
Query 20543 TGCCTCCACTGGAAACCGTAAACAGGTCC 20571
|| | |||||| || |||||||| || ||
Sbjct 235819 TGACGCCACTGAAAGCCGTAAACTGGGCC 235791
>seq3617
Length=57851
Score = 86.0 bits (94), Expect = 6e-12
Identities = 185/269 (69%), Gaps = 6/269 (2%)
Strand=Plus/Minus
Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365
|||||||| |||||||||| |||| ||||||| |||| | | || ||||| ||
Sbjct 12120 CCCATGTCGGCCGACCTCTGGTACATCTGACAGCTGAGCTGGTTGCCGGCCACATAGAAC 12061
Query 20366 TGACATAACA-AGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGG-GTTCCACG 20423
|| || | | ||||||||||||| ||||||||| | | || ||| || |||||| |
Sbjct 12060 TG-CACGAGACAGTGACAGGGCGGCAGCGCCATCTTGGTTAGGT-CGCTGGCGTTCCATG 12003
Query 20424 CACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGT-ACGAC 20482
| ||||| ||||| | || |||| |||||| | | || | | || ||| |
Sbjct 12002 CGCACATGATGATGCGCCTGTCGTCCGGATTGGTGGTGATCTTGGTGATGACGTCACG-C 11944
Query 20483 AATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAG 20542
| ||||| | ||||| ||||||| | | |||| |||| | || ||||||
Sbjct 11943 AGCTGGTCGACACCCTGCGACCTATAGTCGGTGAACATGTCCTTGTACTCGGCTCCAAAG 11884
Query 20543 TGCCTCCACTGGAAACCGTAAACAGGTCC 20571
|| | |||||| || |||||||| || ||
Sbjct 11883 TGACGCCACTGAAAGCCGTAAACTGGGCC 11855
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441115932064720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |