Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq293 114 1e-20 >seq293 Length=664131 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 93943 TGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGAC 94002 ||||||||| | ||| ||| ||| |||| || || | ||||| || ||| | Sbjct 207157 TGTTTCCTGCTAGCGATGCAGGAGGACAGCATCGAAGGCATCTACGACACACTGAAGCAG 207098 Query 94003 TGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCC 94062 || ||| ||||| || | ||||| || || || | || ||| | | | ||| Sbjct 207097 TGCGCGCTGATCTCGAAGTCGGCGGGAGGCATAGGCCTGCACGTGCACTGCATCAGGGCC 207038 Query 94063 AGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGG 94122 || || || |||||| ||| ||||| ||||| |||||||||||||| || ||||| || Sbjct 207037 AGTGGCTCGTACATCGCCGGCACCAACGGCACGTCCAACGGCCTCGTGCCCATGCTGCGT 206978 Query 94123 GTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGG 94160 |||||||||||| || ||||||| || |||||||| || Sbjct 206977 GTCTTCAACAACACGTCGCGCTATGTCGACCAGGGAGG 206940 Score = 105 bits (116), Expect = 7e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148 ||| | ||||| |||| |||||||| || |||||||| || |||||||| ||||||||| Sbjct 199905 AACTCACTGCTATTGGCTCCCATGCCGACCGCCTCCACCGCTCAGATCCTCGGCAACAAC 199846 Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTC 95208 ||||| |||| |||| |||||||||| | ||| || || ||||| | || |||||| Sbjct 199845 GAGTCAGTCGAGCCCTACACCTCCAACATCTACTCGAGACGAGTGCTGTCTGGCGAATTC 199786 Query 95209 C 95209 | Sbjct 199785 C 199785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 94180 TTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAG 94239 |||||| |||| || ||||| |||||||||||||| | | ||| | |||||| ||| Sbjct 205706 TTCGCGATCTACCTGGAGCCGTGGCACGCGGACGTTTACGAGTTCCTGGACCTGAAGAAG 205647 Query 94240 AACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGAC 94299 ||| || || || || | | || | || | |||||||| || |||||||| ||| Sbjct 205646 AACACTGGAAAAGAGGAGGTGCGAGCTCGCGATTTGTTCTACGCACTGTGGGTGCCCGAC 205587 Query 94300 CTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGT 94359 || || ||| ||| |||||| || ||||| || | ||||| | || ||| Sbjct 205586 CTGTTCATGCGACGAGTCGAGGCTGACCAAATGTGGAGCCTCATGTGTCCGCACGACTGT 205527 Query 94360 CCCGGACTGTCCGACGTTTGTGG 94382 ||||| || ||||| ||||| || Sbjct 205526 CCCGGTCTCTCCGATGTTTGGGG 205504 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 94467 GATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAA 94526 |||| | ||| ||| | |||||||| || |||||||| | | ||||||| | | || Sbjct 204105 GATCATTGACTCGCAGATTGAGACGGGCACACCCTACATGCTCTACAAGGACGCCGCTAA 204046 Query 94527 CGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGAT 94586 | |||||||||||||||| |||| || |||||| || ||| ||||||| ||||| Sbjct 204045 CCGCAAGTCCAACCAGCAGAACCTGGGAACAATCAAGTGCAGCAATTTGTGCACAGAGAT 203986 Query 94587 TGTCGAGTATAC 94598 |||||||| || Sbjct 203985 CGTCGAGTACAC 203974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494435283465680