Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq412 102 8e-17
seq1095 100 3e-16
seq293 98.7 1e-15
seq1320 84.2 2e-11
>seq412
Length=567167
Score = 102 bits (112), Expect = 8e-17
Identities = 142/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 52327 TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCA 52386
||||||| ||| | ||||| | ||||| || ||||||||| ||| | || ||||
Sbjct 173612 TGCCGTGTGTTAAGAGGAAGGCGGACTGGGCGTTGCAGTGGATCGCCAGCCAAACGGCCA 173553
Query 52387 CGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCT 52446
|| | | |||||| | ||||| |||||| || |||||| | || || || |||||||
Sbjct 173552 CGTTCGGCGAGCGAGTTGTGGCGTTCGCCGCCGTTGAGGGCATCTTCTTCTCGGGCAGCT 173493
Query 52447 TTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACG 52506
|||| |||| || | |||| | | || | ||||| || || || |||||||| |
Sbjct 173492 TTGCGTCCATATTCTGGCTTAAGAAGCGTGGTCTCATGCCTGGTCTCACCTTCAGCAATG 173433
Query 52507 AGTTGATATCGCGCGACGA 52525
|| | || |||||||| ||
Sbjct 173432 AGCTTATTTCGCGCGATGA 173414
>seq1095
Length=312686
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || ||||| | |||||| || || | | || ||||||||||||||||||||
Sbjct 81815 CCTCCACGCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAA 81756
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || || || || || || |||| | |||| |||||||| ||||| || ||
Sbjct 81755 AGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGG 81696
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| ||||| ||||| ||| || |||| | || | || |||| | || ||
Sbjct 81695 ATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATAGTATCGGATGGTTCAACT 81636
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|| | || | || || || |||||||||||||| || |||||||||
Sbjct 81635 TCCAAAGTGATGGTCTTGCCGGTCAGAGTTTTTACGAATATCTGCATG 81588
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || ||||| | |||||| || || | | || ||||||||||||||||||||
Sbjct 88636 CCTCCACGCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAA 88577
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || || || || || || |||| | |||| |||||||| ||||| || ||
Sbjct 88576 AGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGG 88517
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| ||||| ||||| ||| || |||| | || | || |||| | || ||
Sbjct 88516 ATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATAGTATCGGATGGTTCAACT 88457
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|| | || | || || || |||||||||||||| || |||||||||
Sbjct 88456 TCCAAAGTGATGGTCTTGCCGGTCAGAGTTTTTACGAATATCTGCATG 88409
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || ||||| | || || || || | | |||||||| || ||||||||||| |
Sbjct 84693 CCTCCACGCAACCTCAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 84634
Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| || | || | |||||||| || || |||| | |||| || | ||| ||||| || ||
Sbjct 84633 AGGGTTCTGCCA-TCCTCGAGCTGCTTTCCGGCAAAGATGAGTCTCTGCTGGTCGGGTGG 84575
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || |||| | || | ||||| | || ||||||
Sbjct 84574 AATTCCCTCCTTGTCTTGGATCTTGGCCTTTACATTCTCAATCGTGTCCGACGGCTCCAC 84515
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | ||| | || || || |||| ||||| ||||| ||||||||
Sbjct 84514 CTCCAACGTAATTGTCTTGCCGGTCAACGTTTTCACAAAGATCTGCAT 84467
>seq293
Length=664131
Score = 98.7 bits (108), Expect = 1e-15
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 153258 CTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTA 153317
||| |||||| ||||||| | || |||| || || || ||||| || |||||
Sbjct 201151 CTGACGGGACAGCCGGCATAGGTCTCGTAGGGCCCATCTCGGGCGGCCAACTCACAGCTG 201210
Query 153318 GCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCT 153377
||||| | ||||||||||| ||||| ||| | |||| ||||| | || ||
Sbjct 201211 GCCTCCAAGGCGCCATAGTAGATGGTCTCGAACAGCTGTTGGTTGAGCAGTTGCGACGCT 201270
Query 153378 TCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACG 153437
||||||||| ||||| |||| ||| | || |||||||| ||||||||| |||| |
Sbjct 201271 TCGCTCTCGAACGGCTGCCGCATCAGGATGAACAGGTCGGCCAAACCCTGGATGCCGATG 201330
Query 153438 CCGATGGGTCGATG 153451
||||| || || ||
Sbjct 201331 CCGATCGGCCGGTG 201344
Score = 93.3 bits (102), Expect = 4e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 153036 ACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAG 153095
|| || || ||||| | || |||||||||| | || | ||| ||| | || || |
Sbjct 199781 ACCTGGAATTCGCCAGACAGCACTCGTCTCGAGTAGATGTTGGAGGTGTAGGGCTCGACT 199840
Query 153096 GATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACCAACAAA 153155
|| ||||| ||||| || || ||||| |||| |||||||||||| |||| | ||
Sbjct 199841 GACTCGTTGTTGCCGAGGATCTGAGCGGTGGAGGCGGTCGGCATGGGAGCCAATAGCAGT 199900
Query 153156 GAATTCCGCAAGCCGTG-CGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCCACAGCGC 153214
|| || || | ||| || || | | ||| |||||| |||| ||| ||||||||||
Sbjct 199901 GAGTTGCGGACGCCATGTTGCGCTATCTTCG-CCTTCAGCGCCGCCCAGTCCCACAGCGA 199959
Query 153215 CGACGGTGTCGCGTTCCACATGTCGTACTG 153244
| ||| ||| | |||||||||||| ||
Sbjct 199960 GGTCGGCGTCACTCCCCACATGTCGTATTG 199989
Score = 86.0 bits (94), Expect = 6e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 153864 TCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACG 153923
|||| ||| |||||||| | ||||||||||| || |||||| | ||| || | |||
Sbjct 205513 TCGGAGAGACCGGGACAGTCGTGCGGACACATGAGGCTCCACATTTGGTCAGCCTCGACT 205572
Query 153924 CGTCGCATGAACAGATCCGGCACCCAGAGCGCGTA 153958
|||||||||||||| || |||||||| || |||||
Sbjct 205573 CGTCGCATGAACAGGTCGGGCACCCACAGTGCGTA 205607
>seq1320
Length=267419
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/196 (69%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||| ||||| || || || |||||| || |||||| ||| || | || || || |
Sbjct 95626 TTGATTCCTTCTGGATATTATAGTCGGACAGAGTACGACCGTCTTCCAACTGCTTTCCTG 95567
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538
|||| |||||||| ||||| || || || || || || || |||||| || |
Sbjct 95566 CGAAGATCAGACGCTGCTGGTCAGGTGGAATTCCCTCCTTATCCTGGATTTTCGCCTTCA 95507
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
| || | |||||| | | ||| || || | || | || || |||||||| ||||
Sbjct 95506 CATTCTCAATGGTGTCAGAAGGCTCGACTTCAAGAGTGATGGTCTTGCCAGTCAGGGTTT 95447
Query 138599 TTACAAAAATCTGCAT 138614
| ||||||||||||||
Sbjct 95446 TCACAAAAATCTGCAT 95431
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495973587689760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |