Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq412 102 8e-17 seq1095 100 3e-16 seq293 98.7 1e-15 seq1320 84.2 2e-11 >seq412 Length=567167 Score = 102 bits (112), Expect = 8e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 52327 TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCA 52386 ||||||| ||| | ||||| | ||||| || ||||||||| ||| | || |||| Sbjct 173612 TGCCGTGTGTTAAGAGGAAGGCGGACTGGGCGTTGCAGTGGATCGCCAGCCAAACGGCCA 173553 Query 52387 CGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCT 52446 || | | |||||| | ||||| |||||| || |||||| | || || || ||||||| Sbjct 173552 CGTTCGGCGAGCGAGTTGTGGCGTTCGCCGCCGTTGAGGGCATCTTCTTCTCGGGCAGCT 173493 Query 52447 TTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACG 52506 |||| |||| || | |||| | | || | ||||| || || || |||||||| | Sbjct 173492 TTGCGTCCATATTCTGGCTTAAGAAGCGTGGTCTCATGCCTGGTCTCACCTTCAGCAATG 173433 Query 52507 AGTTGATATCGCGCGACGA 52525 || | || |||||||| || Sbjct 173432 AGCTTATTTCGCGCGATGA 173414 >seq1095 Length=312686 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| | |||||| || || | | || |||||||||||||||||||| Sbjct 81815 CCTCCACGCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAA 81756 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || || || || |||| | |||| |||||||| ||||| || || Sbjct 81755 AGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGG 81696 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || |||| | || | || |||| | || || Sbjct 81695 ATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATAGTATCGGATGGTTCAACT 81636 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || || |||||||||||||| || ||||||||| Sbjct 81635 TCCAAAGTGATGGTCTTGCCGGTCAGAGTTTTTACGAATATCTGCATG 81588 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| | |||||| || || | | || |||||||||||||||||||| Sbjct 88636 CCTCCACGCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAA 88577 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || || || || |||| | |||| |||||||| ||||| || || Sbjct 88576 AGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGG 88517 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || |||| | || | || |||| | || || Sbjct 88516 ATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATAGTATCGGATGGTTCAACT 88457 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || || |||||||||||||| || ||||||||| Sbjct 88456 TCCAAAGTGATGGTCTTGCCGGTCAGAGTTTTTACGAATATCTGCATG 88409 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| | || || || || | | |||||||| || ||||||||||| | Sbjct 84693 CCTCCACGCAACCTCAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 84634 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | |||||||| || || |||| | |||| || | ||| ||||| || || Sbjct 84633 AGGGTTCTGCCA-TCCTCGAGCTGCTTTCCGGCAAAGATGAGTCTCTGCTGGTCGGGTGG 84575 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || |||| | || | ||||| | || |||||| Sbjct 84574 AATTCCCTCCTTGTCTTGGATCTTGGCCTTTACATTCTCAATCGTGTCCGACGGCTCCAC 84515 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | ||| | || || || |||| ||||| ||||| |||||||| Sbjct 84514 CTCCAACGTAATTGTCTTGCCGGTCAACGTTTTCACAAAGATCTGCAT 84467 >seq293 Length=664131 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 153258 CTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTA 153317 ||| |||||| ||||||| | || |||| || || || ||||| || ||||| Sbjct 201151 CTGACGGGACAGCCGGCATAGGTCTCGTAGGGCCCATCTCGGGCGGCCAACTCACAGCTG 201210 Query 153318 GCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCT 153377 ||||| | ||||||||||| ||||| ||| | |||| ||||| | || || Sbjct 201211 GCCTCCAAGGCGCCATAGTAGATGGTCTCGAACAGCTGTTGGTTGAGCAGTTGCGACGCT 201270 Query 153378 TCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACG 153437 ||||||||| ||||| |||| ||| | || |||||||| ||||||||| |||| | Sbjct 201271 TCGCTCTCGAACGGCTGCCGCATCAGGATGAACAGGTCGGCCAAACCCTGGATGCCGATG 201330 Query 153438 CCGATGGGTCGATG 153451 ||||| || || || Sbjct 201331 CCGATCGGCCGGTG 201344 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 153036 ACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAG 153095 || || || ||||| | || |||||||||| | || | ||| ||| | || || | Sbjct 199781 ACCTGGAATTCGCCAGACAGCACTCGTCTCGAGTAGATGTTGGAGGTGTAGGGCTCGACT 199840 Query 153096 GATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACCAACAAA 153155 || ||||| ||||| || || ||||| |||| |||||||||||| |||| | || Sbjct 199841 GACTCGTTGTTGCCGAGGATCTGAGCGGTGGAGGCGGTCGGCATGGGAGCCAATAGCAGT 199900 Query 153156 GAATTCCGCAAGCCGTG-CGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCCACAGCGC 153214 || || || | ||| || || | | ||| |||||| |||| ||| |||||||||| Sbjct 199901 GAGTTGCGGACGCCATGTTGCGCTATCTTCG-CCTTCAGCGCCGCCCAGTCCCACAGCGA 199959 Query 153215 CGACGGTGTCGCGTTCCACATGTCGTACTG 153244 | ||| ||| | |||||||||||| || Sbjct 199960 GGTCGGCGTCACTCCCCACATGTCGTATTG 199989 Score = 86.0 bits (94), Expect = 6e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 153864 TCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACG 153923 |||| ||| |||||||| | ||||||||||| || |||||| | ||| || | ||| Sbjct 205513 TCGGAGAGACCGGGACAGTCGTGCGGACACATGAGGCTCCACATTTGGTCAGCCTCGACT 205572 Query 153924 CGTCGCATGAACAGATCCGGCACCCAGAGCGCGTA 153958 |||||||||||||| || |||||||| || ||||| Sbjct 205573 CGTCGCATGAACAGGTCGGGCACCCACAGTGCGTA 205607 >seq1320 Length=267419 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| ||||| || || || |||||| || |||||| ||| || | || || || | Sbjct 95626 TTGATTCCTTCTGGATATTATAGTCGGACAGAGTACGACCGTCTTCCAACTGCTTTCCTG 95567 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| |||||||| ||||| || || || || || || || |||||| || | Sbjct 95566 CGAAGATCAGACGCTGCTGGTCAGGTGGAATTCCCTCCTTATCCTGGATTTTCGCCTTCA 95507 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | |||||| | | ||| || || | || | || || |||||||| |||| Sbjct 95506 CATTCTCAATGGTGTCAGAAGGCTCGACTTCAAGAGTGATGGTCTTGCCAGTCAGGGTTT 95447 Query 138599 TTACAAAAATCTGCAT 138614 | |||||||||||||| Sbjct 95446 TCACAAAAATCTGCAT 95431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495973587689760