Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1095 116 3e-21 seq738 82.4 5e-11 >seq1095 Length=312686 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || |||||||| ||||| || ||||| || || || ||||| |||||||| || Sbjct 81815 CCTCCACGCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAA 81756 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| | || || || || | || | |||||| ||||| || Sbjct 81755 AGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGG 81696 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || ||| |||||| | || ||||||||| ||| || Sbjct 81695 ATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATAGTATCGGATGGTTCAACT 81636 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || || |||||||||||||| || || ||||| Sbjct 81635 TCCAAAGTGATGGTCTTGCCGGTCAGAGTTTTTACGAATATCTGCAT 81589 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || |||||||| ||||| || ||||| || || || ||||| |||||||| || Sbjct 88636 CCTCCACGCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAA 88577 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| | || || || || | || | |||||| ||||| || Sbjct 88576 AGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGG 88517 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || ||| |||||| | || ||||||||| ||| || Sbjct 88516 ATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATAGTATCGGATGGTTCAACT 88457 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || || |||||||||||||| || || ||||| Sbjct 88456 TCCAAAGTGATGGTCTTGCCGGTCAGAGTTTTTACGAATATCTGCAT 88410 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| ||||| || || || || ||||| || || |||| | ||||| Sbjct 82025 ACCAAGTGAAGTGTAGATTCCTTCTGAATATTGTAGTCTGATAGTGTTCTACCATCTTCC 81966 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || |||||| | || | | ||| |||||| ||||||||||||||| || Sbjct 81965 AGTTGCTTTCCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGAATTCCTTCCTTATCTTGG 81906 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || ||| | || |||||||| | ||| || || | ||| |||||||| Sbjct 81905 ATCTTAGCCTTGACATTCTCAATAGTATCTGAAGGTTCAACTTCCAGGGTGATGGTTTTT 81846 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| ||||| |||||||| |||||| Sbjct 81845 CCAGTCAAGGTTTTGACAAAAATCTGCATA 81816 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| ||||| || || || || ||||| || || |||| | ||||| Sbjct 88846 ACCAAGTGAAGTGTAGATTCCTTCTGAATATTGTAGTCTGATAGTGTTCTACCATCTTCC 88787 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || |||||| | || | | ||| |||||| ||||||||||||||| || Sbjct 88786 AGTTGCTTTCCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGAATTCCTTCCTTATCTTGG 88727 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || ||| | || |||||||| | ||| || || | ||| |||||||| Sbjct 88726 ATCTTAGCCTTGACATTCTCAATAGTATCTGAAGGTTCAACTTCCAGGGTGATGGTTTTT 88667 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| ||||| |||||||| |||||| Sbjct 88666 CCAGTCAAGGTTTTGACAAAAATCTGCATA 88637 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || ||||| ||||| || |||||||| || || | || | || || | || Sbjct 89068 TGGAGAGTAGATTCTTTCTGGATGTTGTAGTCAGACAGTGTCCTTCCATCCTCCAGCTGC 89009 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | || | |||||| |||||| ||| ||||| |||||||| ||| || Sbjct 89008 TTTCCAGCGAAAATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCTTGAATCTTA 88949 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || || || ||| || || || || |||||||| || ||| Sbjct 88948 GCCTTCACGTTCTCAATCGTGTCAGAGGGTTCAACTTCCAATGTGATGGTTTTGCCGGTC 88889 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 ||||||||||| || |||||||| Sbjct 88888 AGAGTTTTTACGAAGATTTGCAT 88866 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || ||||| || |||||||| || || |||| | ||||| | || Sbjct 89296 TGGAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAGTGTTCTGCCATCTTCCAGCTGC 89237 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | || | |||||| || || ||||| ||||||||||| ||| || Sbjct 89236 TTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGAATACCTTCCTTGTCTTGAATCTTA 89177 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || ||||| || ||||| || | ||| ||||| || || ||| Sbjct 89176 GCCTTGACATTCTCGATAGTGTCTGATGGCTCTACTTCCAGGGTGATGGTCTTGCCGGTC 89117 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 ||||| |||||||| |||||||| Sbjct 89116 AGAGTCTTTACAAAGATTTGCAT 89094 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || ||||| || |||||||| || || |||| | ||||| | || Sbjct 89524 TGGAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAGTGTTCTGCCATCTTCCAGCTGC 89465 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | || | |||||| || || ||||| ||||||||||| ||| || Sbjct 89464 TTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGAATACCTTCCTTGTCTTGAATCTTA 89405 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || ||||| || ||||| || | ||| ||||| || || ||| Sbjct 89404 GCCTTGACATTCTCGATAGTGTCTGATGGCTCTACTTCCAGGGTGATGGTCTTGCCGGTC 89345 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 ||||| |||||||| |||||||| Sbjct 89344 AGAGTCTTTACAAAGATTTGCAT 89322 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || ||||| || |||||||| || || |||| | ||||| | || Sbjct 89752 TGGAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAGTGTTCTGCCATCTTCCAGCTGC 89693 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | || | |||||| || || ||||| ||||||||||| ||| || Sbjct 89692 TTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGAATACCTTCCTTGTCTTGAATCTTA 89633 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || ||||| || ||||| || | ||| ||||| || || ||| Sbjct 89632 GCCTTGACATTCTCGATAGTGTCTGATGGCTCTACTTCCAGGGTGATGGTCTTGCCGGTC 89573 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 ||||| |||||||| |||||||| Sbjct 89572 AGAGTCTTTACAAAGATTTGCAT 89550 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || ||||| || |||||||| || || |||| | ||||| | || Sbjct 89980 TGGAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAGTGTTCTGCCATCTTCCAGCTGC 89921 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | || | |||||| || || ||||| ||||||||||| ||| || Sbjct 89920 TTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGAATACCTTCCTTGTCTTGAATCTTA 89861 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || ||||| || ||||| || | ||| ||||| || || ||| Sbjct 89860 GCCTTGACATTCTCGATAGTGTCTGATGGCTCTACTTCCAGGGTGATGGTCTTGCCGGTC 89801 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 ||||| |||||||| |||||||| Sbjct 89800 AGAGTCTTTACAAAGATTTGCAT 89778 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || ||||| || |||||||| || || |||| | ||||| | || Sbjct 90208 TGGAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAGTGTTCTGCCATCTTCCAGCTGC 90149 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | || | |||||| || || ||||| ||||||||||| ||| || Sbjct 90148 TTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGAATACCTTCCTTGTCTTGAATCTTA 90089 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || ||||| || ||||| || | ||| ||||| || || ||| Sbjct 90088 GCCTTGACATTCTCGATAGTGTCTGATGGCTCTACTTCCAGGGTGATGGTCTTGCCGGTC 90029 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 ||||| |||||||| |||||||| Sbjct 90028 AGAGTCTTTACAAAGATTTGCAT 90006 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || ||||| || |||||||| || || |||| | ||||| | || Sbjct 90436 TGGAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAGTGTTCTGCCATCTTCCAGCTGC 90377 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | || | |||||| || || ||||| ||||||||||| ||| || Sbjct 90376 TTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGAATACCTTCCTTGTCTTGAATCTTA 90317 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || ||||| || ||||| || | ||| ||||| || || ||| Sbjct 90316 GCCTTGACATTCTCGATAGTGTCTGATGGCTCTACTTCCAGGGTGATGGTCTTGCCGGTC 90257 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 ||||| |||||||| |||||||| Sbjct 90256 AGAGTCTTTACAAAGATTTGCAT 90234 >seq738 Length=407637 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | |||||||| | ||| | || ||||| |||||||| || ||||| | Sbjct 219701 CCACCACGAAGCCTTAAAACCAGATGCAATGTTGAATCCTTTTGTATATTATAATCCATT 219642 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | ||| | ||||||||||| || || | |||| | ||| ||||| || ||||| Sbjct 219641 ACGAATCTTGAATCTTCTAATTGCTTTCCTGAAAATATGAGACGTTGTTGATCTATTGGA 219582 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCT--ATTTTCTA 15127 || ||||| || || || | ||||| | |||| ||||| | |||| || Sbjct 219581 ATACCTTCTTTATCTTTTATATACTCTTTTATTAGAGCTATTGTATCAGTTGATTTAATA 219522 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || | || || ||| | || || || ||| | ||||| || ||||||||| Sbjct 219521 --TCAATTGTGATTGTTCTCCCAGTAAGTGTTCTAACAAATATCTGCATATTT 219471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357189206621030