Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1320 134 1e-26 seq1095 102 7e-17 seq738 96.9 3e-15 >seq1320 Length=267419 Score = 134 bits (148), Expect = 1e-26 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | || | | || ||||| || ||||||||||| ||||||||||| ||| Sbjct 95660 ATTCCTCCTCTAAGACGGAGTACGAGATGGAGAGTTGATTCCTTCTGGATATTATAGTCG 95601 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | || || ||||| || ||||||||| | |||| || |||||||| | Sbjct 95600 --GACAGAGTACGACCGTCTTCCAACTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCAG 95543 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| || || ||||| || ||||| || | || | |||||| |||| || Sbjct 95542 GTGGAATTCCCTCCTTATCCTGGATTTTCGCCTTCACATTCTCAATGGTGTCAGAAGGCT 95483 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| ||||| | || ||||| || || ||||| |||||||| ||||| Sbjct 95482 CGACTTCAAGAGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 95431 Score = 125 bits (138), Expect = 6e-24 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | || | | || ||||| || ||||||||||| ||||||||||| ||| Sbjct 96116 ATTCCTCCTCTAAGACGGAGTACGAGATGGAGAGTTGATTCCTTCTGGATATTATAGTCG 96057 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | || || ||||| || ||||||||| | |||| || |||||||| | Sbjct 96056 --GACAGAGTACGACCGTCTTCCAACTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCAG 95999 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| || || ||||| || ||||| || | || | |||||| |||| || Sbjct 95998 GTGGAATTCCCTCCTTATCCTGGATTTTCGCCTTCACATTCTCAATGGTGTCAGAAGGCT 95939 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| ||||| | || ||||| || || || || || ||||| ||||| Sbjct 95938 CGACTTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 95887 Score = 125 bits (138), Expect = 6e-24 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | || | | || ||||| || ||||||||||| ||||||||||| ||| Sbjct 96344 ATTCCTCCTCTAAGACGGAGTACGAGATGGAGAGTTGATTCCTTCTGGATATTATAGTCG 96285 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | || || ||||| || ||||||||| | |||| || |||||||| | Sbjct 96284 --GACAGAGTACGACCGTCTTCCAACTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCAG 96227 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| || || ||||| || ||||| || | || | |||||| |||| || Sbjct 96226 GTGGAATTCCCTCCTTATCCTGGATTTTCGCCTTCACATTCTCAATGGTGTCAGAAGGCT 96167 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| ||||| | || ||||| || || || || || ||||| ||||| Sbjct 96166 CGACTTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 96115 Score = 122 bits (134), Expect = 8e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| || ||||| | || ||| ||||| || || || ||||| ||||||||||| ||| Sbjct 96570 TCCACCACGGAGACGCAGCACCAGATGGAGAGTGGACTCCTTCTGGATATTATAGTCG-- 96513 Query 45173 GACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 ||| | | || || ||||| || ||||||||| | |||| || |||||||| || Sbjct 96512 GACAGAGTACGACCGTCTTCCAACTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCAGGT 96453 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || ||||| || ||||| || | || | |||||| || | |||| Sbjct 96452 GGAATTCCCTCCTTATCCTGGATTTTCGCCTTCACATTCTCAATGGTGTCAGATGGCTCG 96393 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| | || ||||| || || || || || ||||| ||||| Sbjct 96392 ACTTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 96343 Score = 120 bits (132), Expect = 3e-22 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | || | | || ||||| || ||||||||||| ||||||||||| ||| Sbjct 95888 ATTCCTCCTCTAAGACGGAGTACGAGATGGAGAGTTGATTCCTTCTGGATATTATAGTCG 95829 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | || || ||||| || ||||||||| | |||| || |||||||| | Sbjct 95828 --GACAGAGTACGACCGTCTTCCAACTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCAG 95771 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| || || ||||| || ||||| || | || | |||||| || | || Sbjct 95770 GTGGAATTCCCTCCTTATCCTGGATTTTCGCCTTCACATTCTCAATGGTGTCAGATGGCT 95711 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| ||||| | || ||||| || || || || || ||||| ||||| Sbjct 95710 CGACTTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 95659 >seq1095 Length=312686 Score = 102 bits (112), Expect = 7e-17 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || || | |||||| || || || || ||||| || ||||| || || || Sbjct 89095 ATTCCTCCACGAAGACGCAACACAAGGTGGAGAGTAGATTCTTTCTGGATGTTGTAGTCA 89036 Query 45171 CTGACGGTTT--TAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| || | | ||| |||| || ||||| ||| | || | || |||||||| | Sbjct 89035 --GACAGTGTCCTTCCATCCTCCAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCGG 88978 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | || || || || || |||||||| || || | || | || | ||||| || | Sbjct 88977 GTGGGATTCCCTCCTTGTCTTGAATCTTAGCCTTCA-CGTTCTCAATCGTGTCAGAGGGT 88919 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | || | ||||||||||| ||||||||||| || |||||||| Sbjct 88918 TCAACTTCCAATGTGATGGTTTTGCCGGTCAGAGTTTTTACGAAGATTTGCAT 88866 >seq738 Length=407637 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || ||||| || || ||||||| ||||| |||||||| ||||||||||| | Sbjct 219701 CCACCACGAAGCCTTAAAACCAGATGCAATGTTGAATCCTTTTGTATATTATAATCCATT 219642 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 ||| | | ||||| || ||||| ||||||| |||| | ||||| || || ||| Sbjct 219641 ACGAATCTTGAATCTTCTAATTGCTTTCCTGAAAATATGAGACGTTGTTGATCTATTGGA 219582 Query 45234 ATGCCTTCTTTATCTT 45249 || ||||||||||||| Sbjct 219581 ATACCTTCTTTATCTT 219566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451740145437680