Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq1320 134 1e-26
seq1095 102 7e-17
seq738 96.9 3e-15
>seq1320
Length=267419
Score = 134 bits (148), Expect = 1e-26
Identities = 170/232 (73%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|||||||| | || | | || ||||| || ||||||||||| ||||||||||| |||
Sbjct 95660 ATTCCTCCTCTAAGACGGAGTACGAGATGGAGAGTTGATTCCTTCTGGATATTATAGTCG 95601
Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
||| | | || || ||||| || ||||||||| | |||| || |||||||| |
Sbjct 95600 --GACAGAGTACGACCGTCTTCCAACTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCAG 95543
Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288
| ||||| || || ||||| || ||||| || | || | |||||| |||| ||
Sbjct 95542 GTGGAATTCCCTCCTTATCCTGGATTTTCGCCTTCACATTCTCAATGGTGTCAGAAGGCT 95483
Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||||| ||||| | || ||||| || || ||||| |||||||| |||||
Sbjct 95482 CGACTTCAAGAGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 95431
Score = 125 bits (138), Expect = 6e-24
Identities = 168/232 (72%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|||||||| | || | | || ||||| || ||||||||||| ||||||||||| |||
Sbjct 96116 ATTCCTCCTCTAAGACGGAGTACGAGATGGAGAGTTGATTCCTTCTGGATATTATAGTCG 96057
Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
||| | | || || ||||| || ||||||||| | |||| || |||||||| |
Sbjct 96056 --GACAGAGTACGACCGTCTTCCAACTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCAG 95999
Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288
| ||||| || || ||||| || ||||| || | || | |||||| |||| ||
Sbjct 95998 GTGGAATTCCCTCCTTATCCTGGATTTTCGCCTTCACATTCTCAATGGTGTCAGAAGGCT 95939
Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||||| ||||| | || ||||| || || || || || ||||| |||||
Sbjct 95938 CGACTTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 95887
Score = 125 bits (138), Expect = 6e-24
Identities = 168/232 (72%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|||||||| | || | | || ||||| || ||||||||||| ||||||||||| |||
Sbjct 96344 ATTCCTCCTCTAAGACGGAGTACGAGATGGAGAGTTGATTCCTTCTGGATATTATAGTCG 96285
Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
||| | | || || ||||| || ||||||||| | |||| || |||||||| |
Sbjct 96284 --GACAGAGTACGACCGTCTTCCAACTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCAG 96227
Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288
| ||||| || || ||||| || ||||| || | || | |||||| |||| ||
Sbjct 96226 GTGGAATTCCCTCCTTATCCTGGATTTTCGCCTTCACATTCTCAATGGTGTCAGAAGGCT 96167
Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||||| ||||| | || ||||| || || || || || ||||| |||||
Sbjct 96166 CGACTTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 96115
Score = 122 bits (134), Expect = 8e-23
Identities = 166/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172
||| || ||||| | || ||| ||||| || || || ||||| ||||||||||| |||
Sbjct 96570 TCCACCACGGAGACGCAGCACCAGATGGAGAGTGGACTCCTTCTGGATATTATAGTCG-- 96513
Query 45173 GACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
||| | | || || ||||| || ||||||||| | |||| || |||||||| ||
Sbjct 96512 GACAGAGTACGACCGTCTTCCAACTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCAGGT 96453
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| || || ||||| || ||||| || | || | |||||| || | ||||
Sbjct 96452 GGAATTCCCTCCTTATCCTGGATTTTCGCCTTCACATTCTCAATGGTGTCAGATGGCTCG 96393
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| ||||| | || ||||| || || || || || ||||| |||||
Sbjct 96392 ACTTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 96343
Score = 120 bits (132), Expect = 3e-22
Identities = 167/232 (72%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|||||||| | || | | || ||||| || ||||||||||| ||||||||||| |||
Sbjct 95888 ATTCCTCCTCTAAGACGGAGTACGAGATGGAGAGTTGATTCCTTCTGGATATTATAGTCG 95829
Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
||| | | || || ||||| || ||||||||| | |||| || |||||||| |
Sbjct 95828 --GACAGAGTACGACCGTCTTCCAACTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCAG 95771
Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288
| ||||| || || ||||| || ||||| || | || | |||||| || | ||
Sbjct 95770 GTGGAATTCCCTCCTTATCCTGGATTTTCGCCTTCACATTCTCAATGGTGTCAGATGGCT 95711
Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||||| ||||| | || ||||| || || || || || ||||| |||||
Sbjct 95710 CGACTTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 95659
>seq1095
Length=312686
Score = 102 bits (112), Expect = 7e-17
Identities = 165/233 (71%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|||||||| || || | |||||| || || || || ||||| || ||||| || || ||
Sbjct 89095 ATTCCTCCACGAAGACGCAACACAAGGTGGAGAGTAGATTCTTTCTGGATGTTGTAGTCA 89036
Query 45171 CTGACGGTTT--TAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
||| || | | ||| |||| || ||||| ||| | || | || |||||||| |
Sbjct 89035 --GACAGTGTCCTTCCATCCTCCAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCGG 88978
Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287
| || || || || || |||||||| || || | || | || | ||||| || |
Sbjct 88977 GTGGGATTCCCTCCTTGTCTTGAATCTTAGCCTTCA-CGTTCTCAATCGTGTCAGAGGGT 88919
Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| ||||| | || | ||||||||||| ||||||||||| || ||||||||
Sbjct 88918 TCAACTTCCAATGTGATGGTTTTGCCGGTCAGAGTTTTTACGAAGATTTGCAT 88866
>seq738
Length=407637
Score = 96.9 bits (106), Expect = 3e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || || ||||| || || ||||||| ||||| |||||||| ||||||||||| |
Sbjct 219701 CCACCACGAAGCCTTAAAACCAGATGCAATGTTGAATCCTTTTGTATATTATAATCCATT 219642
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
||| | | ||||| || ||||| ||||||| |||| | ||||| || || |||
Sbjct 219641 ACGAATCTTGAATCTTCTAATTGCTTTCCTGAAAATATGAGACGTTGTTGATCTATTGGA 219582
Query 45234 ATGCCTTCTTTATCTT 45249
|| |||||||||||||
Sbjct 219581 ATACCTTCTTTATCTT 219566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451740145437680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |