Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq2630 275 8e-69 seq1041 214 2e-50 >seq2630 Length=110644 Score = 275 bits (304), Expect = 8e-69 Identities = 471/674 (70%), Gaps = 21/674 (3%) Strand=Plus/Minus Query 186872 AAGAACTTATGGTTAAAGATGAACCTAAAACAAAAAATCAGGTTATATACATCGCCACTA 186931 ||||| | ||| ||||||| || |||| ||||| || ||| ||||| ||||| || |||| Sbjct 95626 AAGAAATGATGATTAAAGACGATCCTATAACAAGAACTCAAGTTATCTACATTGCAACTA 95567 Query 186932 CTAAACTTTATGCTAAAAATAACCTTTTTAAAGTTGGTGGAACTGATGGTATAGATAAGC 186991 || | | ||||| || ||| || |||||||||||| ||||| || | ||||| Sbjct 95566 CTGAGTTGTATGCCAATTCCAACAACTTCAAAGTTGGTGGAGTTGATGATACAAGTAAGC 95507 Query 186992 TTAAATCTAGGTTGTGTACTTATAATACCGGTAGAGTACACGAAGACTTGTTTTACTACT 187051 ||||||| || |||||||| ||||| || || || || || || || || || | Sbjct 95506 TTAAATCCAGATTGTGTACATATAACACTGGAAGGGTTACTGAGGATCAATTCTATTATT 95447 Query 187052 CGGATACTTTTATGGTTTCAGATTACCATCAAATTGAATCGAGATTAAAAGATTTATTAG 187111 | ||| ||||||||| || ||||||| | || ||| | ||| ||| |||| ||| Sbjct 95446 CCAATATTTTTATGGTATCTAATTACCACCTTATAGAAGCTCAATTGAAAAATTTGTTAC 95387 Query 187112 GGTGTTTTAGGAACAAGAAAGAGAAGGAAATGTATCGTCTTCATTATACTGATTTGAGAT 187171 | ||||||||||| ||||| ||||| ||||| || || || || | || | | || Sbjct 95386 ACCGATTTAGGAACAAAAAAGAAAAGGAGATGTACCGACTACACTACTCAGACATCAAAT 95327 Query 187172 ATATAGTCGAGTACCTGTGTACTCATTACTCTGAAGAAGTAGACGAAGTGAATGCTAAAC 187231 |||| ||||| || || |||| | ||||| || || ||| | || |||| Sbjct 95326 ATATTGTCGATTATCTCTGTAAGAGAGATGGAGAAGACGTGGAAGAAATCAACTCTAAGT 95267 Query 187232 TAGCCCAATTCATTGCTAATTTGAATAAACGTAAATTAAGACCTGTTGTTCCACCCGCGT 187291 | | || || ||||||||||| |||| ||| || || || || | ||||||| || Sbjct 95266 TGACTCAGTTAATTGCTAATTTAAATAGACGCAATTTGAGGCCCATAGTTCCACTTCCG- 95208 Query 187292 TACAC-TCTTATCTAACAAGTGTAACTTGTTTAAATAAAGATGGAACTGTAGATTGTACA 187350 |||| |||||||||| ||| ||| |||| || ||||||||||||| ||| | Sbjct 95207 AACACAAGCTATCTAACAAATGTGACTCGTTTGAAAGAAGATGGAACTGTGGATCAAGTA 95148 Query 187351 ACCATAAAATCATCTTCGTTTGAAG-------GAA--TGGTAAAAGAGTATATCTTAAAA 187401 ||||| ||||| || |||||| ||| | || ||||||||||| ||| Sbjct 95147 ACCATTAAATCTGACTCCGTTGAAGATTTTGAGAAGGTTGTGAAAGAGTATATTCTAACC 95088 Query 187402 CTAAGT---GATACAACAACTGAGATAACTAAGAAAAAGGTATTTGATGATCTTCAAGT- 187457 ||| | | | |||| | ||| ||||||||||||| || || || ||| | || Sbjct 95087 ATAAATCCAGGTGTAACATC---GATTTCTAAGAAAAAGGTGTTCGACGA-CTT-ATGTA 95033 Query 187458 TAAA-AAAGACCGCAAAGATAAATTTCCAATTTTGAGAGCTATTTTAGCTCAACTTAGAC 187516 |||| ||| | || || | ||| ||||||||| | || |||||||| ||| |||||| Sbjct 95032 TAAAGAAAAATCGAAATGCTAAGTTTCCAATTCTTCAAGTTATTTTAGGCCAAATTAGAC 94973 Query 187517 CAGAAATTAAATTA 187530 ||||||||||| || Sbjct 94972 CAGAAATTAAACTA 94959 >seq1041 Length=325342 Score = 214 bits (236), Expect = 2e-50 Identities = 458/674 (68%), Gaps = 33/674 (5%) Strand=Plus/Plus Query 186872 AAGAACTTATGGTTAAAGATGAACCTAAAACAAAAAATCAGGTTATATACATCGCCACTA 186931 ||||| | ||| ||||||| || |||| ||||| || ||| ||||| ||||| || |||| Sbjct 171307 AAGAAATGATGATTAAAGACGATCCTATAACAAGAACTCAAGTTATCTACATTGCAACTA 171366 Query 186932 CTAAACTTTATGCTAAAAATAACCTTTTTAAAGTTGGTGGAACTGATGGTATAGATAAGC 186991 || | | ||||| || ||| || |||||||||||| ||||| || | ||||| Sbjct 171367 CTGAGTTGTATGCCAATTCCAACAACTTCAAAGTTGGTGGAGTTGATGATACAAGTAAGC 171426 Query 186992 TTAAATCTAGGTTGTGTACTTATAATACCGGTAGAGTACACGAAGACTTGTTTTACTACT 187051 ||||||| || |||||||| ||||| || || || || || || || || || | Sbjct 171427 TTAAATCCAGATTGTGTACATATAACACTGGAAGGGTTACTGAGGATCAATTCTATTATT 171486 Query 187052 CGGATACTTTTATGGTTTCAGATTACCATCAAATTGAATCGAGATTAAAAGATTTATTAG 187111 | ||| ||||||||| || ||||||| | || ||| | ||| ||| |||| ||| Sbjct 171487 CCAATATTTTTATGGTATCTAATTACCACCTTATAGAAGCTCAATTGAAAAATTTGTTAC 171546 Query 187112 GGTGTTTTAGGAACAAGAAAGAGAAGGAAATGTATCGTCTTCATTATACTGATTTGAGAT 187171 | ||||||||||| ||||| ||||| ||||| || ||||||||| | || | | | Sbjct 171547 ACCGATTTAGGAACAAAAAAGAAAAGGAGATGTACCGACTTCATTATTCGGACGTCAAGT 171606 Query 187172 ATATAGTCGAGTACCTGTGTACTCATTACTCTGAAGAAGTAGACGAAGTGAATGCTAAAC 187231 | || || | || || | | | | ||||| ||||| |||| || | || Sbjct 171607 ACATTATCAATTATCTCTCCAAACGAGATGGCGAAGATGTAGATCAAGTCAACTCCAAGT 171666 Query 187232 TAGCCCAATTCATTGCTAATTTGAATAAACGTAAATTAAGACCTGTTGTTCCACCCGCGT 187291 | | ||||| || ||||||||||| || ||| || |||||| | |||||| || | Sbjct 171667 TGACTCAATTTATATGTAATTTGAATAGACATAACTTGAGACCTATAGTTCCA-CCTCCA 171725 Query 187292 TACAC-TCTTATCTAACAAGTGTAACTTGTTTAAATAAAGATGGAACTGTAGATTGTACA 187350 |||| ||| || || ||| || ||| || ||||| || || | Sbjct 171726 AACACAAGTTACCTTACTTCAGTAGCTCTTTTGAAAGAAGAT--AA----AG------TA 171773 Query 187351 ACCATAAAATCA---TCTTC------GTTTGAAGGAATGGTAAAAGAGTATATCTTAAAA 187401 ||||| |||||| ||| | ||||| | | || |||||||| || ||| Sbjct 171774 ACCATTAAATCAGACTCTCCTGAAGAATTTGAGAGGGTAGTGAAAGAGTACATTCTAACC 171833 Query 187402 CTAAGT---GATACAACAACTGAGATAACTAAGAAAAAGGTATTTGATGATCTTCAAGT- 187457 |||| | | | |||| | ||| ||||||||||||| || || || ||| | || Sbjct 171834 CTAAATCCAGGTGTAACATC---GATTTCTAAGAAAAAGGTGTTCGACGA-CTT-ATGTA 171888 Query 187458 TAAA-AAAGACCGCAAAGATAAATTTCCAATTTTGAGAGCTATTTTAGCTCAACTTAGAC 187516 |||| ||| | || || | ||| ||||||||| | || |||||||| ||| |||||| Sbjct 171889 TAAAGAAAAATCGAAATGCTAAGTTTCCAATTCTTCAAGTTATTTTAGGCCAAATTAGAC 171948 Query 187517 CAGAAATTAAATTA 187530 ||||||||||| || Sbjct 171949 CAGAAATTAAACTA 171962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658020025797680