Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq738 360 2e-94 seq2120 187 3e-42 >seq738 Length=407637 Score = 360 bits (398), Expect = 2e-94 Identities = 614/878 (70%), Gaps = 13/878 (1%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTT-TCCCTCTAATGATATAC 18727 |||||||||||| || || |||||||||||||| || || | || ||||| ||| Sbjct 114299 TTTTTGATATTCACTCACCCTCTTTTCAAAGAAATTTGTCTTATTAATC-AATGAAATAT 114357 Query 18728 ATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATA 18787 ||||| ||||| || ||||| | ||||| || || ||| |||| | ||| | || Sbjct 114358 TATCCATGAAATCCAAAGGATTATGAACATTGTAAATCTTTGAATATCCAAGTTCAATTA 114417 Query 18788 GTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCA-CAATTCATTCCTATT 18846 || |||||| || |||||| | ||||| | |||| | || | ||||||| |||| Sbjct 114418 ATAATCTATCAGCAACAAATCTTATATAATTAATCAT-AGATGAGCAATTCAAACCTAAA 114476 Query 18847 AATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATA 18906 | || ||| |||| || ||||| ||||||||| ||| |||| ||||| || ||| Sbjct 114477 ATTTCAACGGGTAATGACTCTGTCAGAAATTCTCCTTCAATATCAACTGCTTCCTGTATT 114536 Query 18907 ATAGA-TACAACTCT--ATCT--TCATTAGGAGGGTATAGAAGATGTT-TAAACATCAAA 18960 || || || | || | ||| | ||| | | | || || || | || | | | | Sbjct 114537 ATTGAATAAACCTTTGAATCAGATAATTT--ATGTTTTA-AATATTTCCTATATAAGAGA 114593 Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 |||||||| |||||||||| |||| ||||||||||| | ||||||| || |||||| Sbjct 114594 CATGCAAATTCACAATGTAAGGCCTCATCTCTACTTATAAGTTCATTACTGAAAGTTAAA 114653 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 || ||||| | | ||||| ||||| ||||| | ||||| ||||| ||||| Sbjct 114654 CCTGGCATAATATTACGCTTTTTCAACCAAAATATTGCTGCAAAACTCCCAGAGAAGAAA 114713 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 || ||||| || ||||||| || || | || ||| | |||| | || | || || Sbjct 114714 ATCCCTTCAACCACTGCAAACGCTACCAATCGCTCTGCGAAACTTGAATTTTGATCATAT 114773 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 || |||| |||||| |||| ||| ||| | || || |||||||| | ||| Sbjct 114774 ATATATTTATTTGCCCATATTCCCTTTTTTCTTATTGAAGGGATGGTCTCTATTGCGTTA 114833 Query 19201 AATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATT 19260 || |||| | || ||||||| || | | | |||| ||||| || ||||| Sbjct 114834 AAAAGATGATTCTTCTGATCTGTAGATTCTATGAAAGTTTCTAATAATAAGCTATACATC 114893 Query 19261 TCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATC 19320 |||||||| |||||||| |||| | ||||| | ||| ||| |||| ||||| | || Sbjct 114894 TCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATCTAGCTTCAATGATT 114953 Query 19321 TGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380 |||||||| | |||||||| | |||||| ||| ||| ||| ||| | ||| Sbjct 114954 TGTACTTCTTGAATGAATCTTTCAATCAAATTATCACCAACAATTGTATCTGATGAAGCA 115013 Query 19381 AAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCA 19440 |||||||| | | |||| |||||||||||||||||||| || | | ||||||| | Sbjct 115014 AAAAATGCAAGAATATGTGATATAAAATGTTTTTCATCTGATGTCAGCTTCTTCCAATGA 115073 Query 19441 TTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTA 19500 ||||||| ||||||| ||| || ||||| ||||||||||| || | | || |||| Sbjct 115074 GTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAAAAAGATGCTACAGATTGTTTA 115133 Query 19501 TACATGTTCCATATATCACGATATTGTATAGGAAATAT 19538 ||| ||| ||||||||| | ||| ||| |||||||| Sbjct 115134 TACTTGTACCATATATCGGGGTATAATATTGGAAATAT 115171 Score = 298 bits (330), Expect = 6e-76 Identities = 1174/1827 (64%), Gaps = 75/1827 (4%) Strand=Plus/Plus Query 47009 TTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCAT 47068 || ||||| ||||||||||| |||||||| || || | ||||| ||| ||||| | Sbjct 382841 TTGTGTTCTGAAATAATACATTCCAGTCTTCAATCCAGATTTCCATGTATAAAAATGAAG 382900 Query 47069 ACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATC 47128 |||||| || | |||| ||| ||||| | || || ||||| Sbjct 382901 TGAGCATAATTTTTCATGCGTTGGTTTATTCATAAATATATTCAATGACTGCGATTGATC 382960 Query 47129 AATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATAC 47188 |||||| | |||||||| |||||||| | || | | || | ||||||||||| Sbjct 382961 AATAAACGGTGCTCTATCAATAGCCATATCAACAAGTGTCTTCTGAGAAATCTCCCATAC 383020 Query 47189 TGTTTTATAA-ATTTGTT----TAATGTCTTCTGGGAGATTAGTATTTTGAATAGATCCT 47243 |||| ||||| |||| || ||| | | | | ||| |||||||||| ||||| Sbjct 383021 TGTTCTATAACATTTCTTCAGATAAGAAGGTATCG-ATTTTA-TATTTTGAATTGATCCA 383078 Query 47244 CCgttttctataattt--tgttt--tttaattcatttgaccaaagttttcgttcagttaa 47299 ||| ||||||| ||| | ||| || |||| |||||| | | | || Sbjct 383079 TTGTTCCTCATAATTTCTTGTCTCATTTTAT-CATT---CCAAAGCCCAGCCTGAATCAA 383134 Query 47300 tgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATA 47359 ||| | | || ||| | ||| ||||| | ||||||| || | |||| Sbjct 383135 ATCTTTCATTAAATATTTATTTATAATCTGAAACTGACCAGATAAAACCTGTCTTGTATA 383194 Query 47360 TATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGC 47419 ||||| || |||||| || ||||||| ||| || |||||||| | ||| ||||| Sbjct 383195 AATATTTGAAGTTATTGGTTCAATTGATTCATAATTGCCTAAAATTTGTGAAGTGGATGC 383254 Query 47420 TGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTT-TG-TATCTNNNNN 47477 |||||||| ||||| ||||| |||| | ||||||||| || ||||| Sbjct 383255 GGTAGGCATTTGTGCAATTAATAGAGAGTTTCGAATTCCATATTTACTGATATCTTTTTT 383314 Query 47478 NNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGA 47537 | |||||| || | || || |||||| | |||||| || | | Sbjct 383315 CAGATTA--TCCCAATCAAGAAACTGGGAGGGTTGTTTATTCCATAGATCATACTGCAAA 383372 Query 47538 ATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGT 47597 | || || || | ||| |||| |||| | ||| | || | | |||| ||| Sbjct 383373 AAGCCCTTGCTGAGTGGACTACCAATATAACTGGGATATTGTCCATCATTTCTAGCAAGT 383432 Query 47598 TCACAACTTGCTTCCA---ATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGA 47654 ||||| |||||||| | ||||| ||||| | |||||||||||||| | || | Sbjct 383433 TCACAGCTTGCTTCAAGAGATGCA---TAATAGAGAGTTTCAAATATTTTCTTATTCAAT 383489 Query 47655 TTCCTTGCTTCTGATGATT--CAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATC 47712 | | | |||| | | | || | || ||| ||| || || | Sbjct 383490 TGGATAGATTCT--TCACTGCCATATGGTATTTTTAAAATCATGAATAGATCAGCTAAAC 383547 Query 47713 CTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATG 47772 | |||| || || ||||| ||||||| ||||||| ||||| || | |||| | || Sbjct 383548 CCTGAATTCCGATCCCAATAGGTCTATTTTTTTTATTTGAAAATTCTGTAGCTGGGATTG 383607 Query 47773 GATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTC 47832 ||| | || ||||| || | |||||||||| || | || Sbjct 383608 TATAATAATTCATATCGATTAATTTATTTAGATTTTGTGTAACAACTTTTGTAACCTGTC 383667 Query 47833 TTAATTTATTAAAATCAAAC---TTGTTATTTATAAC---AAACCTATTAAGTGCTATAG 47886 | ||||||| ||||||||| || | ||| ||| ||| |||||| |||||| | Sbjct 383668 TCAATTTATAAAAATCAAATACATTATCATTGGGAACTATAAATTTATTAACTGCTATGG 383727 Query 47887 ATGCTAGATTACATACAGCTACCTCAT--TTGGATTAGTATATTGTATTATTTCAGCACA 47944 | || |||||||| || || | |||| || ||| | | |||||| ||||||| ||| Sbjct 383728 AAGCAAGATTACAGACTGCAATTTCATCTTTTGATGA--AAATTGTACAATTTCAGTACA 383785 Query 47945 TAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCG-T 48003 || |||| ||||| || || |||||||| || ||| | ||| || | | Sbjct 383786 TAAGTTACTGCATTTTATGGTTCCCAAATTAATTTGGTTAGACTTTCTATTA-ATACTAT 383844 Query 48004 CCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCA-A 48062 |||| | | |||| | ||| ||||||||| || ||| ||||| || |||| | Sbjct 383845 CCTTAAATAACATATAGGGTAATCCAGTTTCAATTTGACTATCAATTAT---TTTCATGA 383901 Query 48063 ACAGTCCTA--GCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATA 48120 ||| | || || | ||| | | | | || || ||||| |||| ||||| Sbjct 383902 ACAATTCTCTTGCATCTATTTGTTCCAAATATCTCTTTTCTTGTTCATATTGTCCATATA 383961 Query 48121 ACTTCTCAAATTCAT--CCCCATACACATTATCTAACCCAGGACATTCATTAGGACACAT 48178 ||||| |||| ||||| || | || | ||||||| ||| |||||||| Sbjct 383962 GTAATTCAAACTCATTACCCCAAACGTCTGATAGATTT--GGACATTGATTTGGACACAT 384019 Query 48179 CAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGC 48238 || |||| |||| ||||| || |||| |||||||| ||| | | ||||||| | Sbjct 384020 TAAACTCCAAATTTCATTATTTTCCACCCTAGACATAAATAGATCAGACAACCAAAGACC 384079 Query 48239 TATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTT-AAGTTCAAGA 48296 ||| |||||||| || | ||| ||||| ||||||||| |||| |||| || ||||| | Sbjct 384080 -ATAGAATAAATCTCTTGCTCTAAGTTCATCATTGCCAATATTTTTTTTCAAATTCAA-A 384137 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356 || | || |||||| |||||||| |||||||| ||||| || | |||||||| || Sbjct 384138 AATTTCAAAATATCAATATGCCATGACTCTAAATAGATTGCAATGGCCCCTGGTCGCTTC 384197 Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416 ||||| ||||| | |||| ||| | ||| | | | | | | | | | Sbjct 384198 ---CCTCCCTGATCAACCAATCTCACAGAGCTATTAAATAAACGAATTGTAGAAATTAGA 384254 Query 48417 CCATTTGATATACCATTGGTTCCCGAAAT---ATAACTTCCACTAGCTCTTATATTACTA 48473 |||||||| | ||| || | |||| || | | | | ||| | ||| | Sbjct 384255 CCATTTGAAACCCCA--GGAT----AAATTTTATCATTATCTGTTGCTTTGATACAATGT 384308 Query 48474 ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCA 48533 | | | ||| || ||||| ||| |||||||||| |||||| ||| || |||||| Sbjct 384309 AAAGCTAAACCAATTCCACCCATCATATTAGATATTAAAGCACAATTTTTGAGTGTATCA 384368 Query 48534 TAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGA 48593 ||||| || || |||| | || | |||||| ||||||||| | || |||| | Sbjct 384369 TAAATATTGTCAATTGAATCACTTTCCAAAGTTAATAAAAAACAACTTGCCAATTGCTGC 384428 Query 48594 TGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAAC 48653 || ||| | || ||| | || ||| |||| ||||||| | | |||| | ||||| Sbjct 384429 TGTGGAGTACATGCATTTATTAGTGTAGGAGTTGCATGAGTGTAATATTTTTGTGATAGA 384488 Query 48654 AATTTATATGTTTCAATAACAGAATCTATATC----CCATTGATGTATACCTATAGATAC 48709 | | ||| ||||| | | || |||| ||||| ||||| || ||||| Sbjct 384489 AGATCATAGGTTTCTCTTATTTTGTCAATATTGTTACCATT----TATACTTACCGATAC 384544 Query 48710 ACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGA 48769 | ||| ||||||| |||||||||||||| ||| |||| ||||||| || ||||| Sbjct 384545 TCTCATAAACATATGTTGAGGTCTTTCAATAATAACATTATCAATTTTCATTAGGTATGA 384604 Query 48770 TTTTTCCAATGTTTTAAAACCAAAATA 48796 | |||| ||||||||| | |||||||| Sbjct 384605 TGTTTCTAATGTTTTATATCCAAAATA 384631 >seq2120 Length=154726 Score = 187 bits (206), Expect = 3e-42 Identities = 253/353 (72%), Gaps = 0/353 (0%) Strand=Plus/Minus Query 19186 GTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATC 19245 |||||||| | ||||| |||| | || ||||||| || | | | |||| Sbjct 146121 GTCTCTATTGCGTTAAAAAGATGATTCTTCTGATCTGTAGATTCTATGAAAGTTTCTAAT 146062 Query 19246 AATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACAT 19305 ||||| || ||||| |||||||| |||||||| |||| | ||||| | ||| ||| || Sbjct 146061 AATAAGCTATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAAT 146002 Query 19306 CTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATT 19365 || ||||| | || |||||||| | |||||||| | |||||| ||| ||| ||| Sbjct 146001 CTAGCTTCAATGATTTGTACTTCTTGAATGAATCTTTCAATCAAATTATCACCAACAATT 145942 Query 19366 CCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT 19425 ||| | ||||||||||| | | |||| |||||||||||||||||||| || Sbjct 145941 GTATCTGATGAAGCAAAAAATGCAAGAATATGTGATATAAAATGTTTTTCATCTGATGTC 145882 Query 19426 AATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAA 19485 | | ||||||| | ||||||| ||||||| ||| || ||||| ||||| ||||| Sbjct 145881 AGCTTCTTCCAATGAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAGAAAGAT 145822 Query 19486 GCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATAT 19538 || | | || ||||||| ||| ||||||||| | ||| ||| | |||||| Sbjct 145821 GCTACAGATTGTTTATACTTGTACCATATATCGGGGTATAATATTGAAAATAT 145769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561781666731120