Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq738 264 1e-65 >seq738 Length=407637 Score = 264 bits (292), Expect = 1e-65 Identities = 427/611 (70%), Gaps = 11/611 (2%) Strand=Plus/Plus Query 37151 ATATTTTAAATATTT---AAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCT 37207 || |||||||||||| | | || | ||||||||| ||||||||||| | |||||||| Sbjct 114566 ATGTTTTAAATATTTCCTATATAAGAGACATGCAAATTCACAATGTAAGGCCTCATCTCT 114625 Query 37208 ACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAA 37267 |||||| | ||||||| || ||||| |||||||| | | | ||||| | |||||| Sbjct 114626 ACTTATAAGTTCATTACTGAAAGTTAAACCTGGCATAATATTACGCTTTTTCAACCAAAA 114685 Query 37268 TATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACG 37327 ||||||||||||| ||||| |||||||| |||||||| ||||||| ||||| | || Sbjct 114686 TATTGCTGCAAAACTCCCAGAGAAGAAAATCCCTTCAACCACTGCAAACGCTACCAATCG 114745 Query 37328 TGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTT 37387 ||||| ||||| | | |||| | || |||| |||| ||| | ||||| ||| Sbjct 114746 CTCTGCGAAACTTGAATTTTGATCATATATATATTTATTTGCCCATATTCCCTTT--TTT 114803 Query 37388 AACACATTCA----ATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTG 37443 | ||| | || || || ||||| || || ||| || || | || || | Sbjct 114804 --CTTATTGAAGGGATGGTCTCTATTGCGTTAAAAAGATGATTCTTCTGATCTGTAGATT 114861 Query 37444 TTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCT 37503 ||| |||| || | || ||| |||||||| || || || |||||||| |||| || | Sbjct 114862 CTATGAAAGTTTCTAATAATAAGCTATACATCTCTGAATGTATATTTTCCATAGTTAATT 114921 Query 37504 GAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTA 37563 |||||| || ||| | ||||||||| | ||| || || | || || || | | | Sbjct 114922 GAAAACTGTAGAAAAATCTAGCTTCAATGATTTGTACTTCTTGAATGAATCTTTCAATCA 114981 Query 37564 AGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAAT 37623 | || ||| ||| || ||| | ||||| || ||||||| || | |||||||| Sbjct 114982 AATTATCACCAACAATTGTATCTGATGAAGCAAAAAATGCAAGAATATGTGATATAAAAT 115041 Query 37624 GTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCAT 37683 || ||||||| || | || ||||||| | ||||||| || |||| ||| || || | Sbjct 115042 GTTTTTCATCTGATGTCAGCTTCTTCCAATGAGTAATATCCTTAGATAGATCGACCTCTT 115101 Query 37684 CAACGGTCCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTA 37743 | |||||||||| ||| | | |||||||| | ||| ||||| | | || Sbjct 115102 CTGTGGTCCAAAAAGATGCTACAGATTGTTTATACTTGTACCATATATCGGGGTATAATA 115161 Query 37744 TTGGAAATATT 37754 ||||||||||| Sbjct 115162 TTGGAAATATT 115172 Score = 120 bits (132), Expect = 4e-22 Identities = 173/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 78233 TGTTATTGGAATTGATGAAGGTCAATTTTTTAATGATATAGTGGAATTTTCTGAAAATAT 78292 ||||||| | || ||||| || |||||||| |||| | || ||||||| ||||| || Sbjct 154908 TGTTATTTGTATAGATGAGGGACAATTTTTCGTTGATGTGGTAGAATTTTGTGAAATGAT 154967 Query 78293 GGCAAATAAAGGAAAAATTGTTATTGTTTCGGCATTAGATGCTACATATCAAAGAAAAAC 78352 | | ||| || |||||| |||| || | | | ||||| | |||| | | ||| | Sbjct 154968 GATAGGTAATGGGAAAATTATTATAGTCGCTGGTCTTGATGCAAAATATAATATGAAACC 155027 Query 78353 ATTTGGTAATATTCTAAATTTAATTCCATTATCTGAAAAGGTAATAAAATTAAATGCTAT 78412 |||| |||||| | ||| | |||||| |||| |||||||| |||||| ||| || Sbjct 155028 TTTTGAAAATATTATCAATCTTATTCCAATATCCGAAAAGGTTGATAAATTATCTGCAAT 155087 Query 78413 ATGTAAAATATGTTTTAATGATGCTGCATTTACAAAAAGATTATGTGACGATACTAAAAT 78472 ||| | || ||| ||| ||||| ||||||||||||||| | ||| |||| | Sbjct 155088 TTGTTACATTTGTAATAAAGATGCATATTTTACAAAAAGATTAATACATGATGATAAACT 155147 Query 78473 TGAA 78476 |||| Sbjct 155148 TGAA 155151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591972086430320