Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq3617 114 1e-20 seq986 109 4e-19 >seq3617 Length=57851 Score = 114 bits (126), Expect = 1e-20 Identities = 196/282 (70%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 29932 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACG 29991 || || |||||||| ||||||||||||| | |||||| ||||| | || ||| Sbjct 12126 CCTAGGCCCATGTCGGCCGACCTCTGGTACATCTGACAGCTGAGCTGGTTGCCGGCCACA 12067 Query 29992 TAAAACTGACACATGGT-GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTT 30050 || ||||| ||| | ||| || || || || ||||| | | ||| ||| ||| Sbjct 12066 TAGAACTG-CACGAGACAGTGACAGGGCGGCAGCGCCATCTTGGTTAGGTCGCTGGCGTT 12008 Query 30051 CCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTT 30110 ||| ||||||| ||||||||||||||| || || ||| | |||| | | | ||| Sbjct 12007 CCATGCGCACATGATGATGCGCCTGTCGTCCGGATTGGTGGTGATCTTGGTGATGACGTC 11948 Query 30111 TTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCC 30170 ||||||| || || ||| | | ||||| | ||||||| ||||||| ||||| Sbjct 11947 ACGCAGCTGGTCGACACCCTGCGACCTATAGTCGGTGAACATGTCCTTGTACTCGGCTCC 11888 Query 30171 GAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCC 30212 || || | |||||| || ||||| || || || ||||| || Sbjct 11887 AAAGTGACGCCACTGAAAGCCGTAAACTGGGCCAAGGTCACC 11846 Score = 114 bits (126), Expect = 1e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 29779 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 29838 ||||| | || |||||| || || | || ||||||| || ||| |||||| ||| Sbjct 14071 GGCTCACGCTGCAGCTGAACTTTGAGTGCGTCGACGTGATTCAAGTAAACGTGACAGTCG 14012 Query 29839 CCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 29898 || | ||||| || || || || ||||| || || || |||||||| |||||||||||| Sbjct 14011 CCTATCGTGTGCACGAATTCACCTGGTTCCAGGCCCGTCACGTGAGCTATCATGTACGTG 13952 Query 29899 AGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 29936 || || ||||||||||| ||||| || ||||| || || Sbjct 13951 AGAAGCGAGTAGCTGGCTATGTTGAATGGTACACCTAG 13914 >seq986 Length=341358 Score = 109 bits (120), Expect = 4e-19 Identities = 195/282 (69%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 29932 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACG 29991 || || |||||||| ||||||||||||| | |||||| ||||| | || ||| Sbjct 236062 CCTAGGCCCATGTCGGCCGACCTCTGGTACATCTGACAGCTGAGCTGGTTGCCGGCCACA 236003 Query 29992 TAAAACTGACACATGGT-GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTT 30050 || ||||| ||| | ||| || || || || ||||| | | ||| ||| ||| Sbjct 236002 TAGAACTG-CACGAGACAGTGACAGGGCGGCAGCGCCATCTTGGTTAGGTCGCTGGCGTT 235944 Query 30051 CCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTT 30110 ||| ||||||| ||||||||||||||| || || ||| | |||| | | | ||| Sbjct 235943 CCATGCGCACATGATGATGCGCCTGTCGTCCGGATTGGTGGTGATCTTGGTGATGACGTC 235884 Query 30111 TTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCC 30170 ||| ||| || || ||| | | ||||| | ||||||| ||||||| ||||| Sbjct 235883 ACGCAACTGGTCGACACCCTGCGACCTATAGTCGGTGAACATGTCCTTGTACTCGGCTCC 235824 Query 30171 GAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCC 30212 || || | |||||| || ||||| || || || ||||| || Sbjct 235823 AAAGTGACGCCACTGAAAGCCGTAAACTGGGCCAAGGTCACC 235782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408385739902934