Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1320 109 1e-18 seq1041 107 3e-18 seq1095 102 1e-16 seq738 87.8 3e-12 >seq1320 Length=267419 Score = 109 bits (120), Expect = 1e-18 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||| | || ||||| ||||| | || | || || |||||||||||| Sbjct 95660 ATTCCTCCTCTAAGACGGAGTACGAGATGGAGAGTTGATTCCTTCTGGATATTATAGTCG 95601 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | || || || || ||||| || || || | | ||| || ||||| Sbjct 95600 GACAGAGTACGACCGTCTTCCAACTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCAGGT 95541 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || ||||| || ||||| | || | ||| ||| || || |||| ||| Sbjct 95540 GGAATTCCCTCCTTATCCTGGATTTTCGCCTTCACATTCTCAATGGTGTCAGAAGGCTCG 95481 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| || || || || || || ||||| ||||| || |||||||| Sbjct 95480 ACTTCAAGAGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCATTTT 95428 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||| | || ||||| ||||| | || | || || |||||||||||| Sbjct 96116 ATTCCTCCTCTAAGACGGAGTACGAGATGGAGAGTTGATTCCTTCTGGATATTATAGTCG 96057 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | || || || || ||||| || || || | | ||| || ||||| Sbjct 96056 GACAGAGTACGACCGTCTTCCAACTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCAGGT 95997 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || ||||| || ||||| | || | ||| ||| || || |||| ||| Sbjct 95996 GGAATTCCCTCCTTATCCTGGATTTTCGCCTTCACATTCTCAATGGTGTCAGAAGGCTCG 95937 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| ||||| || || || || || || || || || || || |||||| Sbjct 95936 ACTTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCATT 95886 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||| | || ||||| ||||| | || | || || |||||||||||| Sbjct 96344 ATTCCTCCTCTAAGACGGAGTACGAGATGGAGAGTTGATTCCTTCTGGATATTATAGTCG 96285 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | || || || || ||||| || || || | | ||| || ||||| Sbjct 96284 GACAGAGTACGACCGTCTTCCAACTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCAGGT 96225 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || ||||| || ||||| | || | ||| ||| || || |||| ||| Sbjct 96224 GGAATTCCCTCCTTATCCTGGATTTTCGCCTTCACATTCTCAATGGTGTCAGAAGGCTCG 96165 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| ||||| || || || || || || || || || || || |||||| Sbjct 96164 ACTTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCATT 96114 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||| | || ||||| ||||| | || | || || |||||||||||| Sbjct 95888 ATTCCTCCTCTAAGACGGAGTACGAGATGGAGAGTTGATTCCTTCTGGATATTATAGTCG 95829 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | || || || || ||||| || || || | | ||| || ||||| Sbjct 95828 GACAGAGTACGACCGTCTTCCAACTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCAGGT 95769 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || ||||| || ||||| | || | ||| ||| || || || | ||| Sbjct 95768 GGAATTCCCTCCTTATCCTGGATTTTCGCCTTCACATTCTCAATGGTGTCAGATGGCTCG 95709 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| ||||| || || || || || || || || || || || |||||| Sbjct 95708 ACTTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCATT 95658 Score = 93.3 bits (102), Expect = 8e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||||||| | || | ||| || |||||||||||||| | || | | Sbjct 96557 CGCAGCACCAGATGGAGAGTGGACTCCTTCTGGATATTATAGTCGGACAGAGTACGACCG 96498 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || || ||||| || || || | | ||| || ||||| || ||||| || ||| Sbjct 96497 TCTTCCAACTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCAGGTGGAATTCCCTCCTTA 96438 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||| | || | ||| ||| || || || | ||| ||||| ||||| || Sbjct 96437 TCCTGGATTTTCGCCTTCACATTCTCAATGGTGTCAGATGGCTCGACTTCAAGAGTGATG 96378 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || || || |||||| Sbjct 96377 GTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCATT 96342 >seq1041 Length=325342 Score = 107 bits (118), Expect = 3e-18 Identities = 229/340 (67%), Gaps = 3/340 (1%) Strand=Plus/Plus Query 49909 CGATATATGCTACGAACATATTAAAGATACATTTTATTACGGATTATTCGGTAATTTTAA 49968 ||| | ||| ||||| || |||||||| || |||| | || |||| || | || || Sbjct 170804 CGACACATGTTACGAGCACATTAAAGACACTTTTTGGAATGGTCTATTTGGAGACTTCAA 170863 Query 49969 ACTAGTAATAGATAAAAATACAGGATGTTTTAACGCTACAAAATTATGTAATTTAGGAAG 50028 ||| || |||||||| |||||| | ||||| || || || || || | | ||| | Sbjct 170864 ACTGGTCATAGATAAGGCTACAGGGTACTTTAATGCGACCAAGTTGTGCATTGAAGGTGG 170923 Query 50029 TAAGAGATATAGAAATTGGTTATCGTTAGAAAGATCAAAAGAATTGATTAAATTTATCGA 50088 |||| || ||||| | ||||||| ||| ||| | || |||||| | | Sbjct 170924 AAAGAATTACTTTCATTGGGCAAGATTAGAAAAATCTAAAAATATGGTTAAATACTACCA 170983 Query 50089 TAAAAATAGGCGCTTAGATCACAGCGCCTATTT-TTAT--GAGATAAATGATTCGAATAA 50145 |||||||| | | || | | |||| |||| || || || ||| | || || Sbjct 170984 GAAAAATAGCCCTCCACATGTGGAGGGCAATTTCTTATACGAAATCAAAGATGCTAACAA 171043 Query 50146 GAATCATATTTCTAAACAAATTACCGGTCAGTACGTTCCCAAAGAGATAATACTGGACAT 50205 || | ||| ||||||||||||||| ||| || || ||||| | ||||| || || Sbjct 171044 AGATAAAATTGGAAAACAAATTACCGGTACGTATGTACCTAAAGAACTGATACTTGATAT 171103 Query 50206 ATCTTCGTGGATTTCTGTAGAATTTTATTTAAAATGTAAT 50245 | | || ||||| || ||||||||||| ||||||||| Sbjct 171104 AGCCTCATGGATCTCCATAGAATTTTATGATAAATGTAAT 171143 >seq1095 Length=312686 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||||||||| || | | ||| || || || || |||||||| || ||||| || Sbjct 81734 TGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGGATC 81675 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| |||| ||| ||||||||||| | |||||||| | ||| || || || || Sbjct 81674 TTGGCCTTTACATTCTCGATAGTATCGGATGGTTCAACTTCCAAAGTGATGGTCTTGCCG 81615 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| ||||| ||||| Sbjct 81614 GTCAGAGTTTTTACGAATATCTGCAT 81589 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||||||||| || | | ||| || || || || |||||||| || ||||| || Sbjct 88555 TGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGGATC 88496 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| |||| ||| ||||||||||| | |||||||| | ||| || || || || Sbjct 88495 TTGGCCTTTACATTCTCGATAGTATCGGATGGTTCAACTTCCAAAGTGATGGTCTTGCCG 88436 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| ||||| ||||| Sbjct 88435 GTCAGAGTTTTTACGAATATCTGCAT 88410 Score = 100 bits (110), Expect = 5e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||| || | ||||| ||| || | || |||||||||||||| | |||| Sbjct 78065 ATGTTGTAGTCAGACAGGGTTCTGCCATCTTCGAGCTGCTTTCCGGCAAAAATAAGTCTC 78006 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || || || ||||| || || ||||| || |||| |||| ||| ||| || Sbjct 78005 TGCTGGTCGGGTGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTTACATTCTCAATCGTG 77946 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | ||| || || | || || || || || || | |||||| ||||| || ||| Sbjct 77945 TCCGACGGCTCCACCTCCAACGTAATTGTCTTGCCGGTCAACGTTTTCACAAAGATCTGC 77886 Query 193359 ATTTT 193363 ||||| Sbjct 77885 ATTTT 77881 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||| || | ||||| ||| || | || ||||||||||| || | |||| Sbjct 84648 ATGTTGTAGTCAGACAGGGTTCTGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGTCTC 84589 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || || || ||||| || || ||||| || |||| |||| ||| ||| || Sbjct 84588 TGCTGGTCGGGTGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTTACATTCTCAATCGTG 84529 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | ||| || || | || || || || || || | |||||| ||||| || ||| Sbjct 84528 TCCGACGGCTCCACCTCCAACGTAATTGTCTTGCCGGTCAACGTTTTCACAAAGATCTGC 84469 Query 193359 ATTTT 193363 ||||| Sbjct 84468 ATTTT 84464 >seq738 Length=407637 Score = 87.8 bits (96), Expect = 3e-12 Identities = 159/229 (69%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGT-TCTAGAATCGTC 193210 |||||||||||||| | || || |||||||| || || ||| ||| ||||| || Sbjct 219683 ACCAGATGCAATGTTGAATCCTTTTGTATATTATAATCC-ATTACGAATCTTGAATCTTC 219625 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 |||||| ||||| | ||| || | | |||||||| || || ||||||||||||| Sbjct 219624 TAATTGCTTTCCTGAAAATATGAGACGTTGTTGATCTATTGGAATACCTTCTTTATCTTT 219565 Query 193271 TATTTTGGTTTTTATATTTAAA---ATAGTATCGGAAGACTCAACTTCTAGAGTTATAGT 193327 ||| | ||||| ||| | || ||||| | || | || || | || || || Sbjct 219564 TATATACTCTTTTA---TTAGAGCTATTGTATCAGTTGATTTAATATCAATTGTGATTGT 219508 Query 193328 TTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTAGTAAAATAA 193376 | | || || || ||| | |||||||| ||||| || || ||||| || Sbjct 219507 TCTCCCAGTAAGTGTTCTAACAAATATCTGCATATTTTTTCTAAAAGAA 219459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899130823630560