Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq1173 203 9e-48 >seq1173 Length=295699 Score = 203 bits (224), Expect = 9e-48 Identities = 572/867 (66%), Gaps = 25/867 (3%) Strand=Plus/Minus Query 39497 GTCCGGCGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAAC 39556 ||| ||||| || ||||| ||||||||||| ||||||| || || | || | || || Sbjct 75476 GTCTGGCGAAAATGACATTGCCCAGCCCACAGGTTTTCGAGCAAATAAATCCAATACCAC 75417 Query 39557 GGCGAGGTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTG 39616 || || |||||||| || || ||||| |||||||| ||||| || ||||| |||| Sbjct 75416 CGCCAGATACGCCCATCGTGAGCCTGTCCAAATATAGGTTACATCGCCACACCAAACCTA 75357 Query 39617 ATTTGGCTCGGTCACGGCGAACTGCCTTTCAAGGTAGTTAGGGATAGCAACATGTTCATG 39676 | || |||| || | || || || | || || || ||| |||| | |||| Sbjct 75356 GTCAGGTCCGGTGACAGAAAATTGTCTGTTGAGAAGATTGGGAATATCAACGCGCTCATC 75297 Query 39677 ACCACCACGTTTATACCGGTGAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCAT 39736 | || ||||| || | || | || || || |||| | | ||||| ||| Sbjct 75296 TTCTCCCCGTTTGTATTGATGTTTTCGCGTTTGGCAACTGATAATGTTTAACTCTTCCAT 75237 Query 39737 GAGCCTGCCAGCAAGCCAGCGTCCCATCTGGTAGCC---TCTCCGGGTTGCCATTGTGGC 39793 || | || || ||||| || || | | || | | ||| | || ||||| Sbjct 75236 TAGTTTACCGGCCAGCCAACGGCCAAGTTTTACACCGTATGTATTGGTAACTATCGTGGC 75177 Query 39794 GATGCTTCTTGCTCCGGCCGAACCGTGGCTGATG--CCATGTAGCTCAAGT-ACCTGACT 39850 ||| | || || || || || ||| |||| | ||| |||| | ||| | || Sbjct 75176 GATACGCCTCGCGCCAGCAGACCCGCCACTGACGTTCCA---AGCTTCGCTGACCAGGCT 75120 Query 39851 GCGTAATACAGCCCGTCTGCCGTCTGGTTTTTCAGGACGGTTTTTCCAGTATCTGTAGCT 39910 ||| ||| | |||| | |||||| | || || ||| || | || || Sbjct 75119 ACGTTTTACTGTCCGTTCAGCATCTGGTGCCTTGGGTCGACA---CCAATAGCGATAACT 75063 Query 39911 GCTGCGATGAACCCCGAACACATGGCAGAGTG---TGACCATAGGATAATGCGCTCTGAG 39967 ||| || |||| | || | | || | | | ||| |||||| |||| || || Sbjct 75062 GCTTCGGTGAATATCAAAAATACCACACAACGCTTTTACC---GGATAAAGCGCCCTTAG 75006 Query 39968 TTTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTT 40027 || | | || | |||| | |||| ||||| ||||| |||||||| |||||||||||| Sbjct 75005 CTTGTCAACTACCAAGAATTTTTCATTGAGTCCGACATTAAGAGCGCAGTAGCCTTTTTT 74946 Query 40028 AATATTTCATTCTCCATTTCAATGCGTTGTAGCTTTTTCCTGAGCTCACGGATTTCAATT 40087 || || |||||||||||||| | |||||| | |||||| | | || | || ||||| Sbjct 74945 AAGATGTCATTCTCCATTTCCAGGCGTTGAATTTTTTTCTTCA-TTCCCTGAACTCAATG 74887 Query 40088 TGTTCCGG-GGTAATGGGGGAGGCTTTTGGTGTTTTGCCCTGACGCTCATCACGCAGTTG 40146 || ||||| | |||||| || | | |||||| || ||||| || ||| || Sbjct 74886 TGCTCCGGCGTTAATGGCAGA-CCAGGGGCTGTTTTTCCTTGACGTTCTAAACGAAGGGC 74828 Query 40147 TTTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTGGCGGCATCTGCCAC 40206 | | |||||||| | || | ||||||| |||| ||| ||||| || || || Sbjct 74827 TCTTACCCATCTGCTAATAGCTGAAAGGCTTACATTCATCGCTTTCGCTGCCTCCAGGTG 74768 Query 40207 CGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTAAAATT 40266 ||||| || ||||||| || | || |||| ||| | |||||| || || | | | Sbjct 74767 GGTGTAATTTTGGTCAAGGACTAATTTGGCGGTTTCACATTTAAATTCAGCAGTCA---T 74711 Query 40267 TCtttttttCATTGGAGCACCTGT-GTTGTTCTGAGGTGAGCATATCACCTCTGTTCAGG 40325 | |||| ||||||| ||||| | || |||||| ||||||||||||| | ||| Sbjct 74710 TTTTTTACTCATTGGTCCACCTATAAAAATTATGAGGTAAGCATATCACCTCAACTTAGG 74651 Query 40326 TGGCCAAATTCAGTGTGCCACTTCAAG 40352 |||||||||||||| ||||||| |||| Sbjct 74650 TGGCCAAATTCAGTATGCCACTACAAG 74624 Score = 98.7 bits (108), Expect = 3e-16 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 39981 GAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTCT 40040 ||||||| ||||| ||||| ||||| |||||||| |||||||||||||| || ||||||| Sbjct 38822 GAGAACTTTTCAGTGAGTCCGACATTAAGAGCGCAGTAGCCTTTTTTAAGATGTCATTCT 38881 Query 40041 CCATTTCAATGCGTTGTAGCTTTT 40064 ||||||| | |||||| | |||| Sbjct 38882 CCATTTCCAGGCGTTGGGGTTTTT 38905 Score = 98.7 bits (108), Expect = 3e-16 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 39981 GAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTCT 40040 ||||||| ||||| ||||| ||||| |||||||| |||||||||||||| || ||||||| Sbjct 46190 GAGAACTTTTCAGTGAGTCCGACATTAAGAGCGCAGTAGCCTTTTTTAAGATGTCATTCT 46131 Query 40041 CCATTTCAATGCGTTGTAGCTTTT 40064 ||||||| | |||||| | |||| Sbjct 46130 CCATTTCCAGGCGTTGGGGTTTTT 46107 Score = 80.6 bits (88), Expect = 7e-11 Identities = 95/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 39251 CTGAAGCTTACGTAACCCACCACCGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGT 39310 ||| ||||| |||||| | ||||||||||||| ||||||| || | ||| || Sbjct 38679 CTGCAGCTTTGGTAACCAGCTGTCGGCATCCATTCGGTCTTCAGGCTACGGAAAAATAAC 38738 Query 39311 TCCATTGGGCTGTTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTAT 39370 ||||||||||| || ||||| ||||| || | ||| |||| || || | ||||| || Sbjct 38739 TCCATTGGGCTATTGTCCCAACAGTTCCCCCTGCGGTTCATGCTTTGAGTCATCTGATAA 38798 Query 39371 CGCCACAAT 39379 | | ||||| Sbjct 38799 CACTACAAT 38807 Score = 80.6 bits (88), Expect = 7e-11 Identities = 95/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 39251 CTGAAGCTTACGTAACCCACCACCGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGT 39310 ||| ||||| |||||| | ||||||||||||| ||||||| || | ||| || Sbjct 46333 CTGCAGCTTTGGTAACCAGCTGTCGGCATCCATTCGGTCTTCAGGCTACGGAAAAATAAC 46274 Query 39311 TCCATTGGGCTGTTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTAT 39370 ||||||||||| || ||||| ||||| || | ||| |||| || || | ||||| || Sbjct 46273 TCCATTGGGCTATTGTCCCAACAGTTCCCCCTGCGGTTCATGCTTTGAGTCATCTGATAA 46214 Query 39371 CGCCACAAT 39379 | | ||||| Sbjct 46213 CACTACAAT 46205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132525089493852