Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_021857.1
Length=41475
Score E
Sequences producing significant alignments: (Bits) Value
seq1173 203 9e-48
>seq1173
Length=295699
Score = 203 bits (224), Expect = 9e-48
Identities = 572/867 (66%), Gaps = 25/867 (3%)
Strand=Plus/Minus
Query 39497 GTCCGGCGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAAC 39556
||| ||||| || ||||| ||||||||||| ||||||| || || | || | || ||
Sbjct 75476 GTCTGGCGAAAATGACATTGCCCAGCCCACAGGTTTTCGAGCAAATAAATCCAATACCAC 75417
Query 39557 GGCGAGGTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTG 39616
|| || |||||||| || || ||||| |||||||| ||||| || ||||| ||||
Sbjct 75416 CGCCAGATACGCCCATCGTGAGCCTGTCCAAATATAGGTTACATCGCCACACCAAACCTA 75357
Query 39617 ATTTGGCTCGGTCACGGCGAACTGCCTTTCAAGGTAGTTAGGGATAGCAACATGTTCATG 39676
| || |||| || | || || || | || || || ||| |||| | ||||
Sbjct 75356 GTCAGGTCCGGTGACAGAAAATTGTCTGTTGAGAAGATTGGGAATATCAACGCGCTCATC 75297
Query 39677 ACCACCACGTTTATACCGGTGAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCAT 39736
| || ||||| || | || | || || || |||| | | ||||| |||
Sbjct 75296 TTCTCCCCGTTTGTATTGATGTTTTCGCGTTTGGCAACTGATAATGTTTAACTCTTCCAT 75237
Query 39737 GAGCCTGCCAGCAAGCCAGCGTCCCATCTGGTAGCC---TCTCCGGGTTGCCATTGTGGC 39793
|| | || || ||||| || || | | || | | ||| | || |||||
Sbjct 75236 TAGTTTACCGGCCAGCCAACGGCCAAGTTTTACACCGTATGTATTGGTAACTATCGTGGC 75177
Query 39794 GATGCTTCTTGCTCCGGCCGAACCGTGGCTGATG--CCATGTAGCTCAAGT-ACCTGACT 39850
||| | || || || || || ||| |||| | ||| |||| | ||| | ||
Sbjct 75176 GATACGCCTCGCGCCAGCAGACCCGCCACTGACGTTCCA---AGCTTCGCTGACCAGGCT 75120
Query 39851 GCGTAATACAGCCCGTCTGCCGTCTGGTTTTTCAGGACGGTTTTTCCAGTATCTGTAGCT 39910
||| ||| | |||| | |||||| | || || ||| || | || ||
Sbjct 75119 ACGTTTTACTGTCCGTTCAGCATCTGGTGCCTTGGGTCGACA---CCAATAGCGATAACT 75063
Query 39911 GCTGCGATGAACCCCGAACACATGGCAGAGTG---TGACCATAGGATAATGCGCTCTGAG 39967
||| || |||| | || | | || | | | ||| |||||| |||| || ||
Sbjct 75062 GCTTCGGTGAATATCAAAAATACCACACAACGCTTTTACC---GGATAAAGCGCCCTTAG 75006
Query 39968 TTTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTT 40027
|| | | || | |||| | |||| ||||| ||||| |||||||| ||||||||||||
Sbjct 75005 CTTGTCAACTACCAAGAATTTTTCATTGAGTCCGACATTAAGAGCGCAGTAGCCTTTTTT 74946
Query 40028 AATATTTCATTCTCCATTTCAATGCGTTGTAGCTTTTTCCTGAGCTCACGGATTTCAATT 40087
|| || |||||||||||||| | |||||| | |||||| | | || | || |||||
Sbjct 74945 AAGATGTCATTCTCCATTTCCAGGCGTTGAATTTTTTTCTTCA-TTCCCTGAACTCAATG 74887
Query 40088 TGTTCCGG-GGTAATGGGGGAGGCTTTTGGTGTTTTGCCCTGACGCTCATCACGCAGTTG 40146
|| ||||| | |||||| || | | |||||| || ||||| || ||| ||
Sbjct 74886 TGCTCCGGCGTTAATGGCAGA-CCAGGGGCTGTTTTTCCTTGACGTTCTAAACGAAGGGC 74828
Query 40147 TTTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTGGCGGCATCTGCCAC 40206
| | |||||||| | || | ||||||| |||| ||| ||||| || || ||
Sbjct 74827 TCTTACCCATCTGCTAATAGCTGAAAGGCTTACATTCATCGCTTTCGCTGCCTCCAGGTG 74768
Query 40207 CGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTAAAATT 40266
||||| || ||||||| || | || |||| ||| | |||||| || || | | |
Sbjct 74767 GGTGTAATTTTGGTCAAGGACTAATTTGGCGGTTTCACATTTAAATTCAGCAGTCA---T 74711
Query 40267 TCtttttttCATTGGAGCACCTGT-GTTGTTCTGAGGTGAGCATATCACCTCTGTTCAGG 40325
| |||| ||||||| ||||| | || |||||| ||||||||||||| | |||
Sbjct 74710 TTTTTTACTCATTGGTCCACCTATAAAAATTATGAGGTAAGCATATCACCTCAACTTAGG 74651
Query 40326 TGGCCAAATTCAGTGTGCCACTTCAAG 40352
|||||||||||||| ||||||| ||||
Sbjct 74650 TGGCCAAATTCAGTATGCCACTACAAG 74624
Score = 98.7 bits (108), Expect = 3e-16
Identities = 72/84 (86%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 39981 GAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTCT 40040
||||||| ||||| ||||| ||||| |||||||| |||||||||||||| || |||||||
Sbjct 38822 GAGAACTTTTCAGTGAGTCCGACATTAAGAGCGCAGTAGCCTTTTTTAAGATGTCATTCT 38881
Query 40041 CCATTTCAATGCGTTGTAGCTTTT 40064
||||||| | |||||| | ||||
Sbjct 38882 CCATTTCCAGGCGTTGGGGTTTTT 38905
Score = 98.7 bits (108), Expect = 3e-16
Identities = 72/84 (86%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 39981 GAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTCT 40040
||||||| ||||| ||||| ||||| |||||||| |||||||||||||| || |||||||
Sbjct 46190 GAGAACTTTTCAGTGAGTCCGACATTAAGAGCGCAGTAGCCTTTTTTAAGATGTCATTCT 46131
Query 40041 CCATTTCAATGCGTTGTAGCTTTT 40064
||||||| | |||||| | ||||
Sbjct 46130 CCATTTCCAGGCGTTGGGGTTTTT 46107
Score = 80.6 bits (88), Expect = 7e-11
Identities = 95/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 39251 CTGAAGCTTACGTAACCCACCACCGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGT 39310
||| ||||| |||||| | ||||||||||||| ||||||| || | ||| ||
Sbjct 38679 CTGCAGCTTTGGTAACCAGCTGTCGGCATCCATTCGGTCTTCAGGCTACGGAAAAATAAC 38738
Query 39311 TCCATTGGGCTGTTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTAT 39370
||||||||||| || ||||| ||||| || | ||| |||| || || | ||||| ||
Sbjct 38739 TCCATTGGGCTATTGTCCCAACAGTTCCCCCTGCGGTTCATGCTTTGAGTCATCTGATAA 38798
Query 39371 CGCCACAAT 39379
| | |||||
Sbjct 38799 CACTACAAT 38807
Score = 80.6 bits (88), Expect = 7e-11
Identities = 95/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 39251 CTGAAGCTTACGTAACCCACCACCGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGT 39310
||| ||||| |||||| | ||||||||||||| ||||||| || | ||| ||
Sbjct 46333 CTGCAGCTTTGGTAACCAGCTGTCGGCATCCATTCGGTCTTCAGGCTACGGAAAAATAAC 46274
Query 39311 TCCATTGGGCTGTTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTAT 39370
||||||||||| || ||||| ||||| || | ||| |||| || || | ||||| ||
Sbjct 46273 TCCATTGGGCTATTGTCCCAACAGTTCCCCCTGCGGTTCATGCTTTGAGTCATCTGATAA 46214
Query 39371 CGCCACAAT 39379
| | |||||
Sbjct 46213 CACTACAAT 46205
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132525089493852
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |