Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq1095 111 2e-19
seq738 96.9 5e-15
>seq1095
Length=312686
Score = 111 bits (122), Expect = 2e-19
Identities = 142/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | ||||| || || |||||||| || || | || || |||| | |
Sbjct 81818 TGCAGATTTTTGTCAAAACCTTGACTGGAAAAACCATCACCCTGGAAGTTGAACCTTCAG 81877
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||||||| | ||||| || ||| || ||| ||| ||||| ||||||||||| || |
Sbjct 81878 ATACTATTGAGAATGTCAAGGCTAAGATCCAAGATAAGGAAGGAATTCCACCCGACCAGC 81937
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| ||||| || || || || || ||| | || ||| |||||| || |||| || ||||
Sbjct 81938 AGAGACTTATCTTCGCTGGAAAGCAACTGGAAGATGGTAGAACACTATCAGACTACAATA 81997
Query 146212 TACAAAAAGAATCGAC 146227
| || || ||||| ||
Sbjct 81998 TTCAGAAGGAATCTAC 82013
Score = 111 bits (122), Expect = 2e-19
Identities = 142/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | ||||| || || |||||||| || || | || || |||| | |
Sbjct 88639 TGCAGATTTTTGTCAAAACCTTGACTGGAAAAACCATCACCCTGGAAGTTGAACCTTCAG 88698
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||||||| | ||||| || ||| || ||| ||| ||||| ||||||||||| || |
Sbjct 88699 ATACTATTGAGAATGTCAAGGCTAAGATCCAAGATAAGGAAGGAATTCCACCCGACCAGC 88758
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| ||||| || || || || || ||| | || ||| |||||| || |||| || ||||
Sbjct 88759 AGAGACTTATCTTCGCTGGAAAGCAACTGGAAGATGGTAGAACACTATCAGACTACAATA 88818
Query 146212 TACAAAAAGAATCGAC 146227
| || || ||||| ||
Sbjct 88819 TTCAGAAGGAATCTAC 88834
>seq738
Length=407637
Score = 96.9 bits (106), Expect = 5e-15
Identities = 151/215 (70%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | | |||| | || || | |||||| || |||||| | || | |
Sbjct 219476 TGCAGATATTTGTTAGAACACTTACTGGGAGAACAATCACAATTGATATTAAATCAACTG 219535
Query 146092 ATACTAT---TCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATC 146148
|||| || || || ||||| | | ||| || ||||||||| |||||| ||||
Sbjct 219536 ATACAATAGCTCTAA---TAAAAGAGTATATAAAAGATAAAGAAGGTATTCCAATAGATC 219592
Query 146149 AACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATA 146208
||||| | ||||| ||| |||| || |||||||| ||| ||| ||| |||||||
Sbjct 219593 AACAACGTCTCATATTTTCAGGAAAGCAATTAGAAGATTCAAGATTCGTAATGGATTATA 219652
Query 146209 ATATACAAAAAGAATCGACTATCCATTTAGTATTA 146243
|||||||||| || || || | ||| | || |||
Sbjct 219653 ATATACAAAAGGATTCAACATTGCATCTGGTTTTA 219687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 785708870809360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |