Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1095 111 2e-19 seq738 96.9 5e-15 >seq1095 Length=312686 Score = 111 bits (122), Expect = 2e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| || || |||||||| || || | || || |||| | | Sbjct 81818 TGCAGATTTTTGTCAAAACCTTGACTGGAAAAACCATCACCCTGGAAGTTGAACCTTCAG 81877 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| || ||| || ||| ||| ||||| ||||||||||| || | Sbjct 81878 ATACTATTGAGAATGTCAAGGCTAAGATCCAAGATAAGGAAGGAATTCCACCCGACCAGC 81937 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || || || || || ||| | || ||| |||||| || |||| || |||| Sbjct 81938 AGAGACTTATCTTCGCTGGAAAGCAACTGGAAGATGGTAGAACACTATCAGACTACAATA 81997 Query 146212 TACAAAAAGAATCGAC 146227 | || || ||||| || Sbjct 81998 TTCAGAAGGAATCTAC 82013 Score = 111 bits (122), Expect = 2e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| || || |||||||| || || | || || |||| | | Sbjct 88639 TGCAGATTTTTGTCAAAACCTTGACTGGAAAAACCATCACCCTGGAAGTTGAACCTTCAG 88698 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| || ||| || ||| ||| ||||| ||||||||||| || | Sbjct 88699 ATACTATTGAGAATGTCAAGGCTAAGATCCAAGATAAGGAAGGAATTCCACCCGACCAGC 88758 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || || || || || ||| | || ||| |||||| || |||| || |||| Sbjct 88759 AGAGACTTATCTTCGCTGGAAAGCAACTGGAAGATGGTAGAACACTATCAGACTACAATA 88818 Query 146212 TACAAAAAGAATCGAC 146227 | || || ||||| || Sbjct 88819 TTCAGAAGGAATCTAC 88834 >seq738 Length=407637 Score = 96.9 bits (106), Expect = 5e-15 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | | |||| | || || | |||||| || |||||| | || | | Sbjct 219476 TGCAGATATTTGTTAGAACACTTACTGGGAGAACAATCACAATTGATATTAAATCAACTG 219535 Query 146092 ATACTAT---TCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATC 146148 |||| || || || ||||| | | ||| || ||||||||| |||||| |||| Sbjct 219536 ATACAATAGCTCTAA---TAAAAGAGTATATAAAAGATAAAGAAGGTATTCCAATAGATC 219592 Query 146149 AACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATA 146208 ||||| | ||||| ||| |||| || |||||||| ||| ||| ||| ||||||| Sbjct 219593 AACAACGTCTCATATTTTCAGGAAAGCAATTAGAAGATTCAAGATTCGTAATGGATTATA 219652 Query 146209 ATATACAAAAAGAATCGACTATCCATTTAGTATTA 146243 |||||||||| || || || | ||| | || ||| Sbjct 219653 ATATACAAAAGGATTCAACATTGCATCTGGTTTTA 219687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785708870809360