Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq2630 262 5e-65 seq1041 221 2e-52 >seq2630 Length=110644 Score = 262 bits (290), Expect = 5e-65 Identities = 464/670 (69%), Gaps = 21/670 (3%) Strand=Plus/Minus Query 36953 AGAACTTATGGTTAAAGATGAGCCTAAAACGAAAAATCAGGTGGTTTACATTGCTACTAC 37012 |||| | ||| ||||||| || |||| ||| | || ||| || | |||||||| ||||| Sbjct 95625 AGAAATGATGATTAAAGACGATCCTATAACAAGAACTCAAGTTATCTACATTGCAACTAC 95566 Query 37013 AAAACTTTATGCTAAAAATAACCTTTTCAAAGTTGGCGGAATTGAAAGTATCGATAAGCT 37072 | | ||||| || ||| ||||||||||| ||| |||| || |||||| Sbjct 95565 TGAGTTGTATGCCAATTCCAACAACTTCAAAGTTGGTGGAGTTGATGATACAAGTAAGCT 95506 Query 37073 TAAATCTAGACTGTGTACTTATAATACCGGTAGAGTTAGTGAAGACCTATTTTACTACTC 37132 |||||| ||| ||||||| ||||| || || || |||| ||| || | ||| || || || Sbjct 95505 TAAATCCAGATTGTGTACATATAACACTGGAAGGGTTACTGAGGATCAATTCTATTATTC 95446 Query 37133 AGATACTTTTATGGTTTCGGATTATCATCAAATTGAATCGAGATTAAAAGATTTATTATT 37192 ||| ||||||||| || |||| || | || ||| | ||| ||| |||| ||| Sbjct 95445 CAATATTTTTATGGTATCTAATTACCACCTTATAGAAGCTCAATTGAAAAATTTGTTACA 95386 Query 37193 CTGTTTTCGAAATAAAAAAGAGAAAGAAATGTATCGCCTTCATTACACTGATTTGAGATA 37252 | | ||| | || |||||||| || || ||||| || || || ||| | || | | ||| Sbjct 95385 CCGATTTAGGAACAAAAAAGAAAAGGAGATGTACCGACTACACTACTCAGACATCAAATA 95326 Query 37253 TATAGTCGACTATTTGTGTAATCATTACTCTGAAGAAGTAGATGAAGTAAACTCAAAATT 37312 ||| ||||| ||| | ||||| | ||||| || || ||| | ||||| || || Sbjct 95325 TATTGTCGATTATCTCTGTAAGAGAGATGGAGAAGACGTGGAAGAAATCAACTCTAAGTT 95266 Query 37313 GACTCAATTTATTGCCAATCTTAATAAACGTAAATTAAGACCTGTTGTTCCACCTGC-AT 37371 |||||| || ||||| ||| | |||| ||| || || || || | ||||||| | | | Sbjct 95265 GACTCAGTTAATTGCTAATTTAAATAGACGCAATTTGAGGCCCATAGTTCCACTTCCGAA 95206 Query 37372 TACACTCTTATCTAACAAGTGTAACATGTTTAAATAAAGATGGAACTGTGGAT--TGTAC 37429 ||| | |||||||||| ||| || |||| || ||||||||||||||||| ||| Sbjct 95205 CACAAGC-TATCTAACAAATGTGACTCGTTTGAAAGAAGATGGAACTGTGGATCAAGTA- 95148 Query 37430 CACTATAAAATC-GTCTTC--------ATTTGAGGGAATGGTAAAAGAGTACATCTTAAA 37480 || || ||||| | || | |||||| | || |||||||| || ||| Sbjct 95147 -ACCATTAAATCTGACTCCGTTGAAGATTTTGAGAAGGTTGTGAAAGAGTATATTCTAAC 95089 Query 37481 ACTAAGT---GATACAACAACTGAGATAACTaaaaaaaaGGTATTTGATGACCTTCAAAT 37537 ||| | | | |||| | ||| |||| |||||||| || || ||| | || Sbjct 95088 CATAAATCCAGGTGTAACATC---GATTTCTAAGAAAAAGGTGTTCGACGACTTATGTAT 95032 Query 37538 TAAAAAAGATCGTAAAGACAAGTTTCCAATTTTAAGAGCTATTTTGGCTCAACTAAGACC 37597 || ||| |||| || | |||||||||||| | || |||||| | ||| | ||||| Sbjct 95031 AAAGAAAAATCGAAATGCTAAGTTTCCAATTCTTCAAGTTATTTTAGGCCAAATTAGACC 94972 Query 37598 AGAAATTAAA 37607 |||||||||| Sbjct 94971 AGAAATTAAA 94962 Score = 251 bits (278), Expect = 9e-62 Identities = 355/496 (72%), Gaps = 2/496 (0%) Strand=Plus/Minus Query 175338 AAAGAGTATGCTATAGTTTTAAAAGAACTTATGGTTAAAGATGAACCTAAAACGAAAAAT 175397 |||||||| || | |||| |||||| | ||| ||||||| || |||| ||| | || | Sbjct 95648 AAAGAGTACTCTCTTATTTTGAAAGAAATGATGATTAAAGACGATCCTATAACAAGAACT 95589 Query 175398 CAGGTGGTTTACATTGCTACCACAAAACTTTATGCTAAAAATAACCTTTTCAAAGTTGGC 175457 || || | |||||||| || || | | ||||| || ||| ||||||||||| Sbjct 95588 CAAGTTATCTACATTGCAACTACTGAGTTGTATGCCAATTCCAACAACTTCAAAGTTGGT 95529 Query 175458 GGAATTGAAAGTATCGATAAGCTTAAATCTAGACTGTGTACTTATAATACTGGTAGAGTT 175517 ||| |||| || |||||||||||| ||| ||||||| ||||| ||||| || ||| Sbjct 95528 GGAGTTGATGATACAAGTAAGCTTAAATCCAGATTGTGTACATATAACACTGGAAGGGTT 95469 Query 175518 AGTGAAGACCTATTTTACTACTCAGATACTTTTATGGTATCAGATTACCATCAAATCGAA 175577 | ||| || | ||| || || || ||| |||||||||||| ||||||| | || ||| Sbjct 95468 ACTGAGGATCAATTCTATTATTCCAATATTTTTATGGTATCTAATTACCACCTTATAGAA 95409 Query 175578 TCGAGATTAAAAGATTTATTATCCTGTTTTCGAAATAAAAAAGAGAAAGAAATGTATCGC 175637 | ||| ||| |||| ||| | | ||| | || |||||||| || || ||||| || Sbjct 95408 GCTCAATTGAAAAATTTGTTACACCGATTTAGGAACAAAAAAGAAAAGGAGATGTACCGA 95349 Query 175638 CTTCATTACACTGATTTGAGATATATAGTCGACTATTTGTGTAATCATTACTCTGAAGAA 175697 || || ||| | || | | |||||| ||||| ||| | ||||| | ||||| Sbjct 95348 CTACACTACTCAGACATCAAATATATTGTCGATTATCTCTGTAAGAGAGATGGAGAAGAC 95289 Query 175698 GTAGACGAAGTAAACTCTAAACTAGCTCAATTTATTGCCAATTTAAATAAACGCAAATTA 175757 || || ||| | |||||||| | |||| || ||||| |||||||||| |||||| || Sbjct 95288 GTGGAAGAAATCAACTCTAAGTTGACTCAGTTAATTGCTAATTTAAATAGACGCAATTTG 95229 Query 175758 AGACCTGTTGTTCCACCTGC-ATTACACTCATATTTAACAAGTGTAACATGTTTAAATAA 175816 || || | ||||||| | | | ||| | ||| |||||| ||| || |||| || | Sbjct 95228 AGGCCCATAGTTCCACTTCCGAACACAAGC-TATCTAACAAATGTGACTCGTTTGAAAGA 95170 Query 175817 AGACGGAACTGTGGAT 175832 ||| |||||||||||| Sbjct 95169 AGATGGAACTGTGGAT 95154 >seq1041 Length=325342 Score = 221 bits (244), Expect = 2e-52 Identities = 453/668 (68%), Gaps = 29/668 (4%) Strand=Plus/Plus Query 36953 AGAACTTATGGTTAAAGATGAGCCTAAAACGAAAAATCAGGTGGTTTACATTGCTACTAC 37012 |||| | ||| ||||||| || |||| ||| | || ||| || | |||||||| ||||| Sbjct 171308 AGAAATGATGATTAAAGACGATCCTATAACAAGAACTCAAGTTATCTACATTGCAACTAC 171367 Query 37013 AAAACTTTATGCTAAAAATAACCTTTTCAAAGTTGGCGGAATTGAAAGTATCGATAAGCT 37072 | | ||||| || ||| ||||||||||| ||| |||| || |||||| Sbjct 171368 TGAGTTGTATGCCAATTCCAACAACTTCAAAGTTGGTGGAGTTGATGATACAAGTAAGCT 171427 Query 37073 TAAATCTAGACTGTGTACTTATAATACCGGTAGAGTTAGTGAAGACCTATTTTACTACTC 37132 |||||| ||| ||||||| ||||| || || || |||| ||| || | ||| || || || Sbjct 171428 TAAATCCAGATTGTGTACATATAACACTGGAAGGGTTACTGAGGATCAATTCTATTATTC 171487 Query 37133 AGATACTTTTATGGTTTCGGATTATCATCAAATTGAATCGAGATTAAAAGATTTATTATT 37192 ||| ||||||||| || |||| || | || ||| | ||| ||| |||| ||| Sbjct 171488 CAATATTTTTATGGTATCTAATTACCACCTTATAGAAGCTCAATTGAAAAATTTGTTACA 171547 Query 37193 CTGTTTTCGAAATAAAAAAGAGAAAGAAATGTATCGCCTTCATTACACTGATTTGAGATA 37252 | | ||| | || |||||||| || || ||||| || |||||||| | || | | || Sbjct 171548 CCGATTTAGGAACAAAAAAGAAAAGGAGATGTACCGACTTCATTATTCGGACGTCAAGTA 171607 Query 37253 TATAGTCGACTATTTGTGTAATCATTACTCTGAAGAAGTAGATGAAGTAAACTCAAAATT 37312 || || | ||| | | || | | ||||| |||||| |||| ||||| || || Sbjct 171608 CATTATCAATTATCTCTCCAAACGAGATGGCGAAGATGTAGATCAAGTCAACTCCAAGTT 171667 Query 37313 GACTCAATTTATTGCCAATCTTAATAAACGTAAATTAAGACCTGTTGTTCCACCTGCATT 37372 |||||||||||| ||| | |||| || ||| || |||||| | ||||||||| || Sbjct 171668 GACTCAATTTATATGTAATTTGAATAGACATAACTTGAGACCTATAGTTCCACCTCCA-A 171726 Query 37373 ACAC-TCTTATCTAACAAGTGTAACATGTTTAAATAAAGATGGAACTGTGGATTGTACCA 37431 |||| ||| || || ||| | ||| || ||||| | ||| | Sbjct 171727 ACACAAGTTACCTTACTTCAGTAGCTCTTTTGAAAGAAGAT----------AAAGTA--A 171774 Query 37432 CTATAAAATC-GTCT-TC-------ATTTGAGGGAATGGTAAAAGAGTACATCTTAAAAC 37482 | || ||||| | || || ||||||| | | || ||||||||||| ||| | Sbjct 171775 CCATTAAATCAGACTCTCCTGAAGAATTTGAGAGGGTAGTGAAAGAGTACATTCTAACCC 171834 Query 37483 TAAGT---GATACAACAACTGAGATAACTaaaaaaaaGGTATTTGATGACCTTCAAATTA 37539 ||| | | | |||| | ||| |||| |||||||| || || ||| | || | Sbjct 171835 TAAATCCAGGTGTAACATC---GATTTCTAAGAAAAAGGTGTTCGACGACTTATGTATAA 171891 Query 37540 AAAAAGATCGTAAAGACAAGTTTCCAATTTTAAGAGCTATTTTGGCTCAACTAAGACCAG 37599 | ||| |||| || | |||||||||||| | || |||||| | ||| | ||||||| Sbjct 171892 AGAAAAATCGAAATGCTAAGTTTCCAATTCTTCAAGTTATTTTAGGCCAAATTAGACCAG 171951 Query 37600 AAATTAAA 37607 |||||||| Sbjct 171952 AAATTAAA 171959 Score = 206 bits (228), Expect = 3e-48 Identities = 323/462 (70%), Gaps = 0/462 (0%) Strand=Plus/Plus Query 175317 AATGAAGAGTTAGAAGAAGCTAAAGAGTATGCTATAGTTTTAAAAGAACTTATGGTTAAA 175376 || |||||| | | || | |||||||| || | |||| |||||| | ||| ||||| Sbjct 171264 AAAGAAGAGCTTAACGATACCAAAGAGTACACTCTTATTTTGAAAGAAATGATGATTAAA 171323 Query 175377 GATGAACCTAAAACGAAAAATCAGGTGGTTTACATTGCTACCACAAAACTTTATGCTAAA 175436 || || |||| ||| | || ||| || | |||||||| || || | | ||||| || Sbjct 171324 GACGATCCTATAACAAGAACTCAAGTTATCTACATTGCAACTACTGAGTTGTATGCCAAT 171383 Query 175437 AATAACCTTTTCAAAGTTGGCGGAATTGAAAGTATCGATAAGCTTAAATCTAGACTGTGT 175496 ||| ||||||||||| ||| |||| || |||||||||||| ||| ||||| Sbjct 171384 TCCAACAACTTCAAAGTTGGTGGAGTTGATGATACAAGTAAGCTTAAATCCAGATTGTGT 171443 Query 175497 ACTTATAATACTGGTAGAGTTAGTGAAGACCTATTTTACTACTCAGATACTTTTATGGTA 175556 || ||||| ||||| || |||| ||| || | ||| || || || ||| |||||||||| Sbjct 171444 ACATATAACACTGGAAGGGTTACTGAGGATCAATTCTATTATTCCAATATTTTTATGGTA 171503 Query 175557 TCAGATTACCATCAAATCGAATCGAGATTAAAAGATTTATTATCCTGTTTTCGAAATAAA 175616 || ||||||| | || ||| | ||| ||| |||| ||| | | ||| | || ||| Sbjct 171504 TCTAATTACCACCTTATAGAAGCTCAATTGAAAAATTTGTTACACCGATTTAGGAACAAA 171563 Query 175617 AAAGAGAAAGAAATGTATCGCCTTCATTACACTGATTTGAGATATATAGTCGACTATTTG 175676 ||||| || || ||||| || |||||||| | || | | || || || | ||| | Sbjct 171564 AAAGAAAAGGAGATGTACCGACTTCATTATTCGGACGTCAAGTACATTATCAATTATCTC 171623 Query 175677 TGTAATCATTACTCTGAAGAAGTAGACGAAGTAAACTCTAAACTAGCTCAATTTATTGCC 175736 | || | | ||||| ||||| |||| ||||| || | |||||||||| Sbjct 171624 TCCAAACGAGATGGCGAAGATGTAGATCAAGTCAACTCCAAGTTGACTCAATTTATATGT 171683 Query 175737 AATTTAAATAAACGCAAATTAAGACCTGTTGTTCCACCTGCA 175778 ||||| |||| || || || |||||| | ||||||||| || Sbjct 171684 AATTTGAATAGACATAACTTGAGACCTATAGTTCCACCTCCA 171725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 654898643422000