Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_024385.1 Length=28193 Score E Sequences producing significant alignments: (Bits) Value seq13014 105 1e-18 >seq13014 Length=1707 Score = 105 bits (116), Expect = 1e-18 Identities = 240/360 (67%), Gaps = 6/360 (2%) Strand=Plus/Minus Query 22624 TCTTTGATACGTTGTGGtttttttATAACCAACTAATACATCTTCTTTTTCTAAAATTTC 22683 ||| | ||| ||| |||| | |||||||||| || || || | ||||| | ||||| Sbjct 780 TCTCTTATATGTTTTGGTCTGTTTATAACCACTAAAAACGTCATGCTTTTCAATTATTTC 721 Query 22684 AACAGCTAGATTATACTTTATATCACTTACCTGTTTACTGTATAAATAGT---TCATTCG 22740 |||||||||||| |||| ||| | | |||| |||||||| | || || Sbjct 720 TTTAGCTAGATTATATTTTAAATCTGAAATTTCTTTAGAATATAAATAATCTCTCTTT-- 663 Query 22741 ATCATTGCCAAAACTATTGACTAACAACTTCAATTCGTCATCAACAGTTTTATTTTCTTT 22800 | ||| || ||| || | | ||||||||| |||||| || || |||||||| Sbjct 662 -TTATTACCGAAAGAGTTAATCAGCAACTTCAAAAAGTCATCTGTTGTCTTGTTTTCTTT 604 Query 22801 TTCTCTAATTTCAATAAACTCATCACGACTAACAATTAGCGTTTTTATCCATTCCCTGTC 22860 || |||| || ||||||| ||| |||||| || |||| ||||| || | ||| Sbjct 603 CTCCTTAATCTCGGTAAACTCTGTACGTGAAACAATAAGGCTTTTAATCCACTCACGGTC 544 Query 22861 TTGGTTTAAAACACGGTTAAACATATCAGTAATTGTTTTATCTAAGTCATTATAAACAAC 22920 ||| | ||| || | ||| | || || || |||||||| |||||| || Sbjct 543 TTGAGAGATAACTCGTTCAAAAGCGTTGGTTATATCCTTGTCTAAGTCGTTATAATATAC 484 Query 22921 ATCGATGCCGTTAATCATCAGTTCCGCAGTAATTGCACCGCCACCACCGAAGACATCGTA 22980 || | ||| || | || ||| | |||||||| ||||| || ||||||| ||||| Sbjct 483 TTCTAAGCCATTTAAAATACATTCGGATGTAATTGCTCCGCCTCCTCCGAAGATGTCGTA 424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 90050697179224