Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq71 107 3e-18
>seq71
Length=1040180
Score = 107 bits (118), Expect = 3e-18
Identities = 153/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 182990 AACAACTCGAAAAGGCAGAAACACATGACCCTCTATGGAATGCATCACAAATACAGATGA 183049
|| |||| ||||| ||| |||| ||||| | | |||||| || || || | ||| ||
Sbjct 300717 AAGAACTGGAAAACGCAAAAACTCATGATGATTTGTGGAATTCAGCAGAAGTGCAGTTGT 300776
Query 183050 TGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAAT 183109
||| ||| |||||||| ||| |||| | |||||||||||||| || ||||| |||||||
Sbjct 300777 TGAAAGAGGGAAAAATACATGGTTTCCTGCGAATGTACTGGGCAAAGAAGATTCTTGAAT 300836
Query 183110 GGACAAGAACTCCGGAAGATGC-TTTGAGTTATAGTATCTATATGAACAATAAGTACGAA 183168
|||| | | || ||||| || |||| ||| || ||| | || |||| |||
Sbjct 300837 GGACGACTTCCCCTGAAGAAGCACTTGAAATAT-CCATTTATCTCAATGATAAATACAGT 300895
Query 183169 CTAGACGGTACGGATCCTAACGGATACGTAGGT 183201
| || || | ||||| ||||| | ||| |||
Sbjct 300896 ATGGATGGCAGAGATCCCAACGGTTTCGTTGGT 300928
Score = 98.7 bits (108), Expect = 2e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 182990 AACAACTCGAAAAGGCAGAAACACATGACCCTCTATGGAATGCATCACAAATACAGATGA 183049
|| |||| ||||| ||| |||| ||||| | | |||||| || || || | ||| ||
Sbjct 313633 AAGAACTGGAAAACGCAAAAACTCATGATGATTTGTGGAATTCAGCAGAAGTGCAGTTGT 313692
Query 183050 TGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAAT 183109
||| ||| |||||||| ||| |||| | |||||||||||||| || ||||| ||||| |
Sbjct 313693 TGAAAGAGGGAAAAATACATGGTTTCCTGCGAATGTACTGGGCAAAGAAGATTCTTGAGT 313752
Query 183110 GGACAAGAACTCCGGAAGATGC 183131
|||| | | || ||||| ||
Sbjct 313753 GGACGACCTCCCCTGAAGAAGC 313774
Score = 87.8 bits (96), Expect = 3e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 183198 AGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATATT 183257
||| || |||||||| || || ||| |||||||| || ||| |||||| ||||
Sbjct 301830 AGGGTGCATGTGGTCGATATGTGGAATACACGATCAAGGCTGGGCAGAAAGGAACGTATT 301889
Query 183258 TGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTACATT 183317
||| ||||||||||| |||||||||| ||| ||| | |||||| ||||| || ||||
Sbjct 301890 TGGTAAGATAAGATACATGAATTATGCTGGTTGTAAAAGGAAATTCGATGTAGCCGCATT 301949
Query 183318 T 183318
|
Sbjct 301950 T 301950
Score = 87.8 bits (96), Expect = 3e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 183198 AGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATATT 183257
||| || |||||||| || || ||| |||||||| || ||| |||||| ||||
Sbjct 316250 AGGGTGCATGTGGTCGATATGTGGAATACACGATCAAGGCTGGGCAGAAAGGAACGTATT 316309
Query 183258 TGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTACATT 183317
||| ||||||||||| |||||||||| ||| ||| | |||||| ||||| || ||||
Sbjct 316310 TGGTAAGATAAGATACATGAATTATGCTGGTTGTAAAAGGAAATTCGATGTAGCCGCATT 316369
Query 183318 T 183318
|
Sbjct 316370 T 316370
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 902885437266880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |