Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq71 107 3e-18 >seq71 Length=1040180 Score = 107 bits (118), Expect = 3e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 182990 AACAACTCGAAAAGGCAGAAACACATGACCCTCTATGGAATGCATCACAAATACAGATGA 183049 || |||| ||||| ||| |||| ||||| | | |||||| || || || | ||| || Sbjct 300717 AAGAACTGGAAAACGCAAAAACTCATGATGATTTGTGGAATTCAGCAGAAGTGCAGTTGT 300776 Query 183050 TGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAAT 183109 ||| ||| |||||||| ||| |||| | |||||||||||||| || ||||| ||||||| Sbjct 300777 TGAAAGAGGGAAAAATACATGGTTTCCTGCGAATGTACTGGGCAAAGAAGATTCTTGAAT 300836 Query 183110 GGACAAGAACTCCGGAAGATGC-TTTGAGTTATAGTATCTATATGAACAATAAGTACGAA 183168 |||| | | || ||||| || |||| ||| || ||| | || |||| ||| Sbjct 300837 GGACGACTTCCCCTGAAGAAGCACTTGAAATAT-CCATTTATCTCAATGATAAATACAGT 300895 Query 183169 CTAGACGGTACGGATCCTAACGGATACGTAGGT 183201 | || || | ||||| ||||| | ||| ||| Sbjct 300896 ATGGATGGCAGAGATCCCAACGGTTTCGTTGGT 300928 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 182990 AACAACTCGAAAAGGCAGAAACACATGACCCTCTATGGAATGCATCACAAATACAGATGA 183049 || |||| ||||| ||| |||| ||||| | | |||||| || || || | ||| || Sbjct 313633 AAGAACTGGAAAACGCAAAAACTCATGATGATTTGTGGAATTCAGCAGAAGTGCAGTTGT 313692 Query 183050 TGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAAT 183109 ||| ||| |||||||| ||| |||| | |||||||||||||| || ||||| ||||| | Sbjct 313693 TGAAAGAGGGAAAAATACATGGTTTCCTGCGAATGTACTGGGCAAAGAAGATTCTTGAGT 313752 Query 183110 GGACAAGAACTCCGGAAGATGC 183131 |||| | | || ||||| || Sbjct 313753 GGACGACCTCCCCTGAAGAAGC 313774 Score = 87.8 bits (96), Expect = 3e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 183198 AGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATATT 183257 ||| || |||||||| || || ||| |||||||| || ||| |||||| |||| Sbjct 301830 AGGGTGCATGTGGTCGATATGTGGAATACACGATCAAGGCTGGGCAGAAAGGAACGTATT 301889 Query 183258 TGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTACATT 183317 ||| ||||||||||| |||||||||| ||| ||| | |||||| ||||| || |||| Sbjct 301890 TGGTAAGATAAGATACATGAATTATGCTGGTTGTAAAAGGAAATTCGATGTAGCCGCATT 301949 Query 183318 T 183318 | Sbjct 301950 T 301950 Score = 87.8 bits (96), Expect = 3e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 183198 AGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATATT 183257 ||| || |||||||| || || ||| |||||||| || ||| |||||| |||| Sbjct 316250 AGGGTGCATGTGGTCGATATGTGGAATACACGATCAAGGCTGGGCAGAAAGGAACGTATT 316309 Query 183258 TGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTACATT 183317 ||| ||||||||||| |||||||||| ||| ||| | |||||| ||||| || |||| Sbjct 316310 TGGTAAGATAAGATACATGAATTATGCTGGTTGTAAAAGGAAATTCGATGTAGCCGCATT 316369 Query 183318 T 183318 | Sbjct 316370 T 316370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902885437266880