Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_024451.1
Length=220222
Score E
Sequences producing significant alignments: (Bits) Value
seq2630 181 1e-40
seq1041 174 2e-38
>seq2630
Length=110644
Score = 181 bits (200), Expect = 1e-40
Identities = 296/420 (70%), Gaps = 10/420 (2%)
Strand=Plus/Plus
Query 60775 TTTCAATTTCTTTAATTTTCTTTTCAAGGATTGCCTTGTCCATTGTCTGAAACTGACTAA 60834
|||| | |||||||||||| |||||||| | | ||||||||| ||| ||| | | |
Sbjct 95729 TTTCTACTTCTTTAATTTTAGTTTCAAGGTTAGAATTGTCCATTTTCTTAAATTCGTTGA 95788
Query 60835 CAAAATAGTCGAGAATCACACTATTGCACTTATCATAGAACTCGACTGATATCCAGGATG 60894
|||| |||| || || | |||| || |||||||| ||||| | || ||||| || |
Sbjct 95789 CAAAGTAGTTGATGATAATTTTATTACATTTATCATAAAACTCTATGGAGATCCATGAAG 95848
Query 60895 CAATATCAAGGATAAGTTCCTTGCGAACATACTGGCCAGTAATTTGTTTATTAATTTCGT 60954
| |||||||| || ||||| || | ||||| |||||||||||| |||| | || |
Sbjct 95849 CTATATCAAGTATTAGTTCTTTAGGTACATATGTACCAGTAATTTGTCTATTGAGTTTAT 95908
Query 60955 CATTGTTCGTTAATTTCACTTCGT---AAAAGCTGGCGCTCATAAATGAGCGCCAGCTTT 61011
||||||| | || ||||||| ||||||| || ||| | ||| | | | | |
Sbjct 95909 CATTGTTTTGAAGCTTGACTTCGTATAAAAAGCT-GCCCTC-CACATGTG-GAGGGGTAT 95965
Query 61012 TACTTTGATAATGTTCCAACAATTTTTTGGATTTTTCCAGACGAGACCAATTCGTAA--A 61069
| | || || | || | || ||||| |||||||| | | | ||||| | || |
Sbjct 95966 TTTTCTGGTAGTATTTAACCATCTTTTTCGATTTTTCTAATCTTGCCCAAT--GAAAGTA 96023
Query 61070 tttttttCCTCCATAATTGCAGAGTTTGGTTGCATTAAAACAACCTGTGTTCTTATCAAC 61129
|| ||||| || | | |||| | ||||| |||||||| | ||||| |||||| |
Sbjct 96024 ATTCTTTCCACCTTCAATGCACAACTTGGTCGCATTAAAGTACCCTGTAGCCTTATCTAT 96083
Query 61130 AACCAACTTAAAGTCTCCAAATAGCCCATAGTAAAAGTTGTCTTTAATATGTTCATAACA 61189
|||| || |||||||||||||| |||| |||| |||||||||| || || |||||
Sbjct 96084 GACCAGTTTGAAGTCTCCAAATAGACCATTCCAAAAAGTGTCTTTAATGTGCTCGTAACA 96143
>seq1041
Length=325342
Score = 174 bits (192), Expect = 2e-38
Identities = 294/420 (70%), Gaps = 8/420 (2%)
Strand=Plus/Minus
Query 60775 TTTCAATTTCTTTAATTTTCTTTTCAAGGATTGCCTTGTCCATTGTCTGAAACTGACTAA 60834
|||||| |||||||||||| ||||||| | | | |||||| ||| ||| | |||
Sbjct 171225 TTTCAACTTCTTTAATTTTTGTTTCAAGCTTAGAATCATCCATTTTCTTAAATTCGTTAA 171166
Query 60835 CAAAATAGTCGAGAATCACACTATTGCACTTATCATAGAACTCGACTGATATCCAGGATG 60894
|||| ||||| | ||| | |||| || |||||||| || || | || ||||| || |
Sbjct 171165 CAAAGTAGTCAATAATAATTTTATTACATTTATCATAAAATTCTATGGAGATCCATGAGG 171106
Query 60895 CAATATCAAGGATAAGTTCCTTGCGAACATACTGGCCAGTAATTTGTTTATTAATTTCGT 60954
| |||||||| || ||||| || | |||||| || ||||||||||| ||||| |
Sbjct 171105 CTATATCAAGTATCAGTTCTTTAGGTACATACGTACCGGTAATTTGTTTTCCAATTTTAT 171046
Query 60955 CATTGTTCGTTAATTTCACTTCGTAAAAG--CTGGCGCTCATAAATGAGCGCCAGCTTTT 61012
| ||||| | ||| | |||||| ||| | || ||| | ||| | | ||| ||
Sbjct 171045 CTTTGTTAGCATCTTTGATTTCGTATAAGAAATTGCCCTC-CACATGTG-GAGGGCTATT 170988
Query 61013 ACTTTGATAATGTTCCAACAATTTTTTGGATTTTTCCAGACGAGACCAATTCGTAA--At 61070
| || || | || | || ||||| |||||||| | | | ||||| | || |
Sbjct 170987 TTTCTGGTAGTATTTAACCATATTTTTAGATTTTTCTAATCTTGCCCAAT--GAAAGTAA 170930
Query 61071 ttttttCCTCCATAATTGCAGAGTTTGGTTGCATTAAAACAACCTGTGTTCTTATCAACA 61130
|| ||||| || | | |||| | ||||| |||||||| | ||||| |||||| |
Sbjct 170929 TTCTTTCCACCTTCAATGCACAACTTGGTCGCATTAAAGTACCCTGTAGCCTTATCTATG 170870
Query 61131 ACCAACTTAAAGTCTCCAAATAGCCCATAGTAAAAGTTGTCTTTAATATGTTCATAACAT 61190
|||| || |||||||||||||| |||| |||| |||||||||| || || ||||||
Sbjct 170869 ACCAGTTTGAAGTCTCCAAATAGACCATTCCAAAAAGTGTCTTTAATGTGCTCGTAACAT 170810
Score = 123 bits (136), Expect = 4e-23
Identities = 263/393 (67%), Gaps = 20/393 (5%)
Strand=Plus/Minus
Query 116630 AGAGTCATCTCTTTTGTTTTGAATTCAGACACAAAAAAGTCGACAATAATTTCGTTACAT 116689
||| ||||| |||| || ||||| ||||| |||| | |||||||| ||||||
Sbjct 171194 AGAATCATCCATTTTCTTA--AATTCGTTAACAAAGTAGTCAATAATAATTTTATTACAT 171137
Query 116690 TTGTCATAAAATTCAATGGATATCCACGAAGCAATGTCAAGTATGAGCTCTTTTGAAACA 116749
|| ||||||||||| ||||| ||||| || || || |||||||| || ||||| | |||
Sbjct 171136 TTATCATAAAATTCTATGGAGATCCATGAGGCTATATCAAGTATCAGTTCTTTAGGTACA 171077
Query 116750 TATTGTCCGGTAATTTTTGCATCAGTTTCGTTTTTATTGGCCCCTTTTACCTCATAGAGG 116809
|| |||||||||| | || ||| | ||| || || |||| | || || | |
Sbjct 171076 TACGTACCGGTAATTTGTTTTCCAATTTTATCTTTGTTAGCATCTTTGATTTCGTATAAG 171017
Query 116810 ------------CCATGATTATGGCCCCTATTTTTATGGTCATAAAATCTCAATAACttt 116857
|||| | || |||||||| ||| || || | | | |||
Sbjct 171016 AAATTGCCCTCCACATGTGGAGGG---CTATTTTTCTGG---TAGTATTTAACCATATTT 170963
Query 116858 tttgatttttCTAACACAGTCCAATTTCTGAATTTTTTGCCACCATCTTTGCAAAGTTTG 116917
|| ||||||||||| | ||||| | | || || ||||| || |||| | |||
Sbjct 170962 TTAGATTTTTCTAATCTTGCCCAATGAAAGTAATTCTTTCCACCTTCAATGCACAACTTG 170903
Query 116918 GTGGCATTAAAATATCCCGTCTCCTTATCGACAACCAACTTAAAGTCTCCAAATATCCCA 116977
|| |||||||| || || || ||||||| | |||| || ||||||||||||| |||
Sbjct 170902 GTCGCATTAAAGTACCCTGTAGCCTTATCTATGACCAGTTTGAAGTCTCCAAATAGACCA 170843
Query 116978 TGGTGGAAATTATCCTTGATTTGTTCATAACAT 117010
| ||| | || || || || || ||||||
Sbjct 170842 TTCCAAAAAGTGTCTTTAATGTGCTCGTAACAT 170810
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 704172350657760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |