Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_024451.1 Length=220222 Score E Sequences producing significant alignments: (Bits) Value seq2630 181 1e-40 seq1041 174 2e-38 >seq2630 Length=110644 Score = 181 bits (200), Expect = 1e-40 Identities = 296/420 (70%), Gaps = 10/420 (2%) Strand=Plus/Plus Query 60775 TTTCAATTTCTTTAATTTTCTTTTCAAGGATTGCCTTGTCCATTGTCTGAAACTGACTAA 60834 |||| | |||||||||||| |||||||| | | ||||||||| ||| ||| | | | Sbjct 95729 TTTCTACTTCTTTAATTTTAGTTTCAAGGTTAGAATTGTCCATTTTCTTAAATTCGTTGA 95788 Query 60835 CAAAATAGTCGAGAATCACACTATTGCACTTATCATAGAACTCGACTGATATCCAGGATG 60894 |||| |||| || || | |||| || |||||||| ||||| | || ||||| || | Sbjct 95789 CAAAGTAGTTGATGATAATTTTATTACATTTATCATAAAACTCTATGGAGATCCATGAAG 95848 Query 60895 CAATATCAAGGATAAGTTCCTTGCGAACATACTGGCCAGTAATTTGTTTATTAATTTCGT 60954 | |||||||| || ||||| || | ||||| |||||||||||| |||| | || | Sbjct 95849 CTATATCAAGTATTAGTTCTTTAGGTACATATGTACCAGTAATTTGTCTATTGAGTTTAT 95908 Query 60955 CATTGTTCGTTAATTTCACTTCGT---AAAAGCTGGCGCTCATAAATGAGCGCCAGCTTT 61011 ||||||| | || ||||||| ||||||| || ||| | ||| | | | | | Sbjct 95909 CATTGTTTTGAAGCTTGACTTCGTATAAAAAGCT-GCCCTC-CACATGTG-GAGGGGTAT 95965 Query 61012 TACTTTGATAATGTTCCAACAATTTTTTGGATTTTTCCAGACGAGACCAATTCGTAA--A 61069 | | || || | || | || ||||| |||||||| | | | ||||| | || | Sbjct 95966 TTTTCTGGTAGTATTTAACCATCTTTTTCGATTTTTCTAATCTTGCCCAAT--GAAAGTA 96023 Query 61070 tttttttCCTCCATAATTGCAGAGTTTGGTTGCATTAAAACAACCTGTGTTCTTATCAAC 61129 || ||||| || | | |||| | ||||| |||||||| | ||||| |||||| | Sbjct 96024 ATTCTTTCCACCTTCAATGCACAACTTGGTCGCATTAAAGTACCCTGTAGCCTTATCTAT 96083 Query 61130 AACCAACTTAAAGTCTCCAAATAGCCCATAGTAAAAGTTGTCTTTAATATGTTCATAACA 61189 |||| || |||||||||||||| |||| |||| |||||||||| || || ||||| Sbjct 96084 GACCAGTTTGAAGTCTCCAAATAGACCATTCCAAAAAGTGTCTTTAATGTGCTCGTAACA 96143 >seq1041 Length=325342 Score = 174 bits (192), Expect = 2e-38 Identities = 294/420 (70%), Gaps = 8/420 (2%) Strand=Plus/Minus Query 60775 TTTCAATTTCTTTAATTTTCTTTTCAAGGATTGCCTTGTCCATTGTCTGAAACTGACTAA 60834 |||||| |||||||||||| ||||||| | | | |||||| ||| ||| | ||| Sbjct 171225 TTTCAACTTCTTTAATTTTTGTTTCAAGCTTAGAATCATCCATTTTCTTAAATTCGTTAA 171166 Query 60835 CAAAATAGTCGAGAATCACACTATTGCACTTATCATAGAACTCGACTGATATCCAGGATG 60894 |||| ||||| | ||| | |||| || |||||||| || || | || ||||| || | Sbjct 171165 CAAAGTAGTCAATAATAATTTTATTACATTTATCATAAAATTCTATGGAGATCCATGAGG 171106 Query 60895 CAATATCAAGGATAAGTTCCTTGCGAACATACTGGCCAGTAATTTGTTTATTAATTTCGT 60954 | |||||||| || ||||| || | |||||| || ||||||||||| ||||| | Sbjct 171105 CTATATCAAGTATCAGTTCTTTAGGTACATACGTACCGGTAATTTGTTTTCCAATTTTAT 171046 Query 60955 CATTGTTCGTTAATTTCACTTCGTAAAAG--CTGGCGCTCATAAATGAGCGCCAGCTTTT 61012 | ||||| | ||| | |||||| ||| | || ||| | ||| | | ||| || Sbjct 171045 CTTTGTTAGCATCTTTGATTTCGTATAAGAAATTGCCCTC-CACATGTG-GAGGGCTATT 170988 Query 61013 ACTTTGATAATGTTCCAACAATTTTTTGGATTTTTCCAGACGAGACCAATTCGTAA--At 61070 | || || | || | || ||||| |||||||| | | | ||||| | || | Sbjct 170987 TTTCTGGTAGTATTTAACCATATTTTTAGATTTTTCTAATCTTGCCCAAT--GAAAGTAA 170930 Query 61071 ttttttCCTCCATAATTGCAGAGTTTGGTTGCATTAAAACAACCTGTGTTCTTATCAACA 61130 || ||||| || | | |||| | ||||| |||||||| | ||||| |||||| | Sbjct 170929 TTCTTTCCACCTTCAATGCACAACTTGGTCGCATTAAAGTACCCTGTAGCCTTATCTATG 170870 Query 61131 ACCAACTTAAAGTCTCCAAATAGCCCATAGTAAAAGTTGTCTTTAATATGTTCATAACAT 61190 |||| || |||||||||||||| |||| |||| |||||||||| || || |||||| Sbjct 170869 ACCAGTTTGAAGTCTCCAAATAGACCATTCCAAAAAGTGTCTTTAATGTGCTCGTAACAT 170810 Score = 123 bits (136), Expect = 4e-23 Identities = 263/393 (67%), Gaps = 20/393 (5%) Strand=Plus/Minus Query 116630 AGAGTCATCTCTTTTGTTTTGAATTCAGACACAAAAAAGTCGACAATAATTTCGTTACAT 116689 ||| ||||| |||| || ||||| ||||| |||| | |||||||| |||||| Sbjct 171194 AGAATCATCCATTTTCTTA--AATTCGTTAACAAAGTAGTCAATAATAATTTTATTACAT 171137 Query 116690 TTGTCATAAAATTCAATGGATATCCACGAAGCAATGTCAAGTATGAGCTCTTTTGAAACA 116749 || ||||||||||| ||||| ||||| || || || |||||||| || ||||| | ||| Sbjct 171136 TTATCATAAAATTCTATGGAGATCCATGAGGCTATATCAAGTATCAGTTCTTTAGGTACA 171077 Query 116750 TATTGTCCGGTAATTTTTGCATCAGTTTCGTTTTTATTGGCCCCTTTTACCTCATAGAGG 116809 || |||||||||| | || ||| | ||| || || |||| | || || | | Sbjct 171076 TACGTACCGGTAATTTGTTTTCCAATTTTATCTTTGTTAGCATCTTTGATTTCGTATAAG 171017 Query 116810 ------------CCATGATTATGGCCCCTATTTTTATGGTCATAAAATCTCAATAACttt 116857 |||| | || |||||||| ||| || || | | | ||| Sbjct 171016 AAATTGCCCTCCACATGTGGAGGG---CTATTTTTCTGG---TAGTATTTAACCATATTT 170963 Query 116858 tttgatttttCTAACACAGTCCAATTTCTGAATTTTTTGCCACCATCTTTGCAAAGTTTG 116917 || ||||||||||| | ||||| | | || || ||||| || |||| | ||| Sbjct 170962 TTAGATTTTTCTAATCTTGCCCAATGAAAGTAATTCTTTCCACCTTCAATGCACAACTTG 170903 Query 116918 GTGGCATTAAAATATCCCGTCTCCTTATCGACAACCAACTTAAAGTCTCCAAATATCCCA 116977 || |||||||| || || || ||||||| | |||| || ||||||||||||| ||| Sbjct 170902 GTCGCATTAAAGTACCCTGTAGCCTTATCTATGACCAGTTTGAAGTCTCCAAATAGACCA 170843 Query 116978 TGGTGGAAATTATCCTTGATTTGTTCATAACAT 117010 | ||| | || || || || || |||||| Sbjct 170842 TTCCAAAAAGTGTCTTTAATGTGCTCGTAACAT 170810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 704172350657760