Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1095 114 1e-20 seq293 86.0 6e-12 >seq1095 Length=312686 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| | ||||||||| || | | || || ||||||||||||||||| | || Sbjct 81810 ACGCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAAAGAGT 81751 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || |||| | |||| |||||||| || ||||| || || || Sbjct 81750 GCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGGATTCC 81691 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || || || | | || | |||||||| || || ||||| | Sbjct 81690 TTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATAGTATCGGATGGTTCAACTTCCAA 81631 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || ||||||||||||| ||| ||||||||| Sbjct 81630 AGTGATGGTCTTGCCGGTCAGAGTTTTTACGAATATCTGCATG 81588 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| | ||||||||| || | | || || ||||||||||||||||| | || Sbjct 88631 ACGCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAAAGAGT 88572 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || |||| | |||| |||||||| || ||||| || || || Sbjct 88571 GCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGGATTCC 88512 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || || || | | || | |||||||| || || ||||| | Sbjct 88511 TTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATAGTATCGGATGGTTCAACTTCCAA 88452 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || ||||||||||||| ||| ||||||||| Sbjct 88451 AGTGATGGTCTTGCCGGTCAGAGTTTTTACGAATATCTGCATG 88409 >seq293 Length=664131 Score = 86.0 bits (94), Expect = 6e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 147726 ATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAAC 147785 ||||| || |||||||| | ||||||||||| || |||||| | ||| || | || Sbjct 205512 ATCGGAGAGACCGGGACAGTCGTGCGGACACATGAGGCTCCACATTTGGTCAGCCTCGAC 205571 Query 147786 GCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCT 147837 |||||||| ||||| || ||||||||||| ||||| | | |||||| ||| Sbjct 205572 TCGTCGCATGAACAGGTCGGGCACCCACAGTGCGTAGAACAAATCGCGAGCT 205623 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 147934 TTTCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGG 147993 || || ||||||||||||| |||| | ||||||| || || |||| |||||| | ||| Sbjct 206937 TTGCCTCCCTGGTCGACATAGCGCGACGTGTTGTTGAAGACACGCAGCATGGGCACGAGG 206996 Query 147994 CCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACG 148053 ||| | | |||||||||||| ||| | ||| | ||| | | ||||||| Sbjct 206997 CCGTTGGACGTGCCGTTGGTGCCGGCGATGTACGAGCCACTGGCCCTGATGCAGTGCACG 207056 Query 148054 TTAACGCCAATGCC-GCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTA 148112 | | ||| ||||| |||||| |||| || || ||||| | || ||| ||| Sbjct 207057 TGCAGGCCTATGCCTCCCGCCG-ACTTCGAGATCAGCGCGCACTGCTTCAGTGTGTCGTA 207115 Query 148113 GATGCCGTCGATGCTGTC 148130 |||||| ||||||||||| Sbjct 207116 GATGCCTTCGATGCTGTC 207133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476333824196880