Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1095 105 6e-18 >seq1095 Length=312686 Score = 105 bits (116), Expect = 6e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| || || |||||| | ||||| | ||||| ||| | Sbjct 81817 ATGCAGATTTTTGTCAAAACCTTGACTGGAAAAACCATCACCCTGGAAGTTGAACCTTCA 81876 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| ||| | || || || || ||||| || || || || ||||| ||| Sbjct 81877 GATACTATTGAGAATGTCAAGGCTAAGATCCAAGATAAGGAAGGAATTCCACCCGACCAG 81936 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || ||||| || | || || || ||||| ||||||| ||||| | |||| | |||| Sbjct 81937 CAGAGACTTATCTTCGCTGGAAAGCAACTGGAAGATGGTAGAACACTATCAG--ACTACA 81994 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||||| || ||||| || |||| || ||| | || | | ||||||| Sbjct 81995 ATATTCAGAAGGAATCTACACTTCACTTGGTGCTGCGACTCCGTGGAGGAA 82045 Score = 105 bits (116), Expect = 6e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| || || |||||| | ||||| | ||||| ||| | Sbjct 88638 ATGCAGATTTTTGTCAAAACCTTGACTGGAAAAACCATCACCCTGGAAGTTGAACCTTCA 88697 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| ||| | || || || || ||||| || || || || ||||| ||| Sbjct 88698 GATACTATTGAGAATGTCAAGGCTAAGATCCAAGATAAGGAAGGAATTCCACCCGACCAG 88757 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || ||||| || | || || || ||||| ||||||| ||||| | |||| | |||| Sbjct 88758 CAGAGACTTATCTTCGCTGGAAAGCAACTGGAAGATGGTAGAACACTATCAG--ACTACA 88815 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||||| || ||||| || |||| || ||| | || | | ||||||| Sbjct 88816 ATATTCAGAAGGAATCTACACTTCACTTGGTGCTGCGACTCCGTGGAGGAA 88866 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || |||||||| | ||||| || | ||||| | ||||| ||| | Sbjct 81588 CATGCAGATATTCGTAAAAACTCTGACCGGCAAGACCATCACTTTGGAAGTTGAACCATC 81647 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||||||||||| | ||||| || || || || || || || || || || || Sbjct 81648 CGATACTATCGAGAATGTAAAGGCCAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCA 81707 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | || || | | ||| || || || ||||||| | | | | || ||||| Sbjct 81708 GCAGCGTCTTATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTTTCTGACTACAA 81767 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||| |||||||| |||| || || || |||||| | ||||| Sbjct 81768 CATTCAAAAGGAATCCACTCTTCACTTGGTTTTGAGATTGCGTGGAGG 81815 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || |||||||| | ||||| || | ||||| | ||||| ||| | Sbjct 88409 CATGCAGATATTCGTAAAAACTCTGACCGGCAAGACCATCACTTTGGAAGTTGAACCATC 88468 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||||||||||| | ||||| || || || || || || || || || || || Sbjct 88469 CGATACTATCGAGAATGTAAAGGCCAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCA 88528 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | || || | | ||| || || || ||||||| | | | | || ||||| Sbjct 88529 GCAGCGTCTTATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTTTCTGACTACAA 88588 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||| |||||||| |||| || || || |||||| | ||||| Sbjct 88589 CATTCAAAAGGAATCCACTCTTCACTTGGTTTTGAGATTGCGTGGAGG 88636 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||| || | ||||| || | ||||| | ||||| || || | Sbjct 90462 ATGCAAATCTTTGTAAAGACTCTGACCGGCAAGACCATCACCTTGGAAGTGGAGCCCTCC 90521 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || || || || || ||||| || || ||||| ||| Sbjct 90522 GATACCATTGAAAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATTCCACCCGACCAG 90581 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || ||||| || | || || || ||||| || |||| ||||| |||| | | |||| Sbjct 90582 CAGAGACTTATCTTCGCTGGAAAGCAACTGGAGGATGGTAGAACCCTGTCTG--ACTACA 90639 Query 25353 ATATTCAAAAAGAATCCAC 25371 | || ||||||||||| || Sbjct 90640 ACATCCAAAAAGAATCTAC 90658 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||| || | ||||| || | ||||| | ||||| || |||| | Sbjct 89094 ATGCAAATCTTTGTAAAGACTCTGACCGGCAAGACCATCACCCTGGAAGTAGA-GCCATC 89152 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||||||| | || || || ||| || || || ||||| || || ||||| Sbjct 89153 AGACACTATCGAGAATGTCAAGGCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCA 89212 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 ||| | || || | || || || || || ||||||| |||| | |||| | ||| Sbjct 89213 GCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGCAGAACACTATCAG--ACTAC 89270 Query 25352 AATATTCAAAAAGAATCCAC 25371 || || || ||||||||||| Sbjct 89271 AACATCCAGAAAGAATCCAC 89290 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||| || | ||||| || | ||||| | ||||| || |||| | Sbjct 89322 ATGCAAATCTTTGTAAAGACTCTGACCGGCAAGACCATCACCCTGGAAGTAGA-GCCATC 89380 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||||||| | || || || ||| || || || ||||| || || ||||| Sbjct 89381 AGACACTATCGAGAATGTCAAGGCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCA 89440 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 ||| | || || | || || || || || ||||||| |||| | |||| | ||| Sbjct 89441 GCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGCAGAACACTATCAG--ACTAC 89498 Query 25352 AATATTCAAAAAGAATCCAC 25371 || || || ||||||||||| Sbjct 89499 AACATCCAGAAAGAATCCAC 89518 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||| || | ||||| || | ||||| | ||||| || |||| | Sbjct 89550 ATGCAAATCTTTGTAAAGACTCTGACCGGCAAGACCATCACCCTGGAAGTAGA-GCCATC 89608 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||||||| | || || || ||| || || || ||||| || || ||||| Sbjct 89609 AGACACTATCGAGAATGTCAAGGCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCA 89668 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 ||| | || || | || || || || || ||||||| |||| | |||| | ||| Sbjct 89669 GCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGCAGAACACTATCAG--ACTAC 89726 Query 25352 AATATTCAAAAAGAATCCAC 25371 || || || ||||||||||| Sbjct 89727 AACATCCAGAAAGAATCCAC 89746 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||| || | ||||| || | ||||| | ||||| || |||| | Sbjct 89778 ATGCAAATCTTTGTAAAGACTCTGACCGGCAAGACCATCACCCTGGAAGTAGA-GCCATC 89836 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||||||| | || || || ||| || || || ||||| || || ||||| Sbjct 89837 AGACACTATCGAGAATGTCAAGGCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCA 89896 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 ||| | || || | || || || || || ||||||| |||| | |||| | ||| Sbjct 89897 GCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGCAGAACACTATCAG--ACTAC 89954 Query 25352 AATATTCAAAAAGAATCCAC 25371 || || || ||||||||||| Sbjct 89955 AACATCCAGAAAGAATCCAC 89974 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||| || | ||||| || | ||||| | ||||| || |||| | Sbjct 90006 ATGCAAATCTTTGTAAAGACTCTGACCGGCAAGACCATCACCCTGGAAGTAGA-GCCATC 90064 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||||||| | || || || ||| || || || ||||| || || ||||| Sbjct 90065 AGACACTATCGAGAATGTCAAGGCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCA 90124 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 ||| | || || | || || || || || ||||||| |||| | |||| | ||| Sbjct 90125 GCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGCAGAACACTATCAG--ACTAC 90182 Query 25352 AATATTCAAAAAGAATCCAC 25371 || || || ||||||||||| Sbjct 90183 AACATCCAGAAAGAATCCAC 90202 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||| || | ||||| || | ||||| | ||||| || |||| | Sbjct 90234 ATGCAAATCTTTGTAAAGACTCTGACCGGCAAGACCATCACCCTGGAAGTAGA-GCCATC 90292 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||||||| | || || || ||| || || || ||||| || || ||||| Sbjct 90293 AGACACTATCGAGAATGTCAAGGCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCA 90352 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 ||| | || || | || || || || || ||||||| |||| | |||| | ||| Sbjct 90353 GCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGCAGAACACTATCAG--ACTAC 90410 Query 25352 AATATTCAAAAAGAATCCAC 25371 || || || ||||||||||| Sbjct 90411 AACATCCAGAAAGAATCCAC 90430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444835366186560