Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq3617 113 5e-20
seq986 100 3e-16
>seq3617
Length=57851
Score = 113 bits (124), Expect = 5e-20
Identities = 113/147 (77%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 146907 CAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTG 146966
|||||||| ||| || | || ||||| || | ||| ||||| ||| || | |||||
Sbjct 14060 CAGCTGAACTTTGAGTGCGTCGACGTGATTCAAGTAAACGTGACAGTCGCCTATCGTGTG 14001
Query 146967 CACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTA 147026
||| || || || || | ||||| |||||||| || | |||||| ||||| ||||||||
Sbjct 14000 CACGAATTCACCTGGTTCCAGGCCCGTCACGTGAGCTATCATGTACGTGAGAAGCGAGTA 13941
Query 147027 GCTGGCTATGTTGAAGGGGACCCCCAG 147053
||||||||||||||| || || || ||
Sbjct 13940 GCTGGCTATGTTGAATGGTACACCTAG 13914
Score = 105 bits (116), Expect = 8e-18
Identities = 194/282 (69%), Gaps = 2/282 (1%)
Strand=Plus/Minus
Query 147049 CCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACG 147108
|| ||||||||||| ||||||||||||||| ||| || ||||| | |||||||
Sbjct 12126 CCTAGGCCCATGTCGGCCGACCTCTGGTACATCTGACAGCTGAGCTGGTTGCCGGCCACA 12067
Query 147109 TAAAACTGGCACAGGAT-GTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTT 147167
|| ||||| ||| || ||| || |||||||||||||| || ||||| || |||
Sbjct 12066 TAGAACTG-CACGAGACAGTGACAGGGCGGCAGCGCCATCTTGGTTAGGTCGCTGGCGTT 12008
Query 147168 CCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCA 147227
||| || | | | | |||||| || || || | | |||| ||| ||
Sbjct 12007 CCATGCGCACATGATGATGCGCCTGTCGTCCGGATTGGTGGTGATCTTGGTGATGACGTC 11948
Query 147228 CCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCC 147287
| ||||||||| || ||||| || |||| || |||| |||| ||| ||
Sbjct 11947 ACGCAGCTGGTCGACACCCTGCGACCTATAGTCGGTGAACATGTCCTTGTACTCGGCTCC 11888
Query 147288 AAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCC 147329
|||||| | |||||| |||||||| ||||| || ||||| ||
Sbjct 11887 AAAGTGACGCCACTGAAAGCCGTAAACTGGGCCAAGGTCACC 11846
>seq986
Length=341358
Score = 100 bits (110), Expect = 3e-16
Identities = 193/282 (68%), Gaps = 2/282 (1%)
Strand=Plus/Minus
Query 147049 CCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACG 147108
|| ||||||||||| ||||||||||||||| ||| || ||||| | |||||||
Sbjct 236062 CCTAGGCCCATGTCGGCCGACCTCTGGTACATCTGACAGCTGAGCTGGTTGCCGGCCACA 236003
Query 147109 TAAAACTGGCACAGGAT-GTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTT 147167
|| ||||| ||| || ||| || |||||||||||||| || ||||| || |||
Sbjct 236002 TAGAACTG-CACGAGACAGTGACAGGGCGGCAGCGCCATCTTGGTTAGGTCGCTGGCGTT 235944
Query 147168 CCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCA 147227
||| || | | | | |||||| || || || | | |||| ||| ||
Sbjct 235943 CCATGCGCACATGATGATGCGCCTGTCGTCCGGATTGGTGGTGATCTTGGTGATGACGTC 235884
Query 147228 CCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCC 147287
| || |||||| || ||||| || |||| || |||| |||| ||| ||
Sbjct 235883 ACGCAACTGGTCGACACCCTGCGACCTATAGTCGGTGAACATGTCCTTGTACTCGGCTCC 235824
Query 147288 AAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCC 147329
|||||| | |||||| |||||||| ||||| || ||||| ||
Sbjct 235823 AAAGTGACGCCACTGAAAGCCGTAAACTGGGCCAAGGTCACC 235782
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583148424571200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |