Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_027341.1
Length=130008
Score E
Sequences producing significant alignments: (Bits) Value
seq13085 289 2e-73
seq10675 181 9e-41
>seq13085
Length=1678
Score = 289 bits (320), Expect = 2e-73
Identities = 251/316 (79%), Gaps = 44/316 (14%)
Strand=Plus/Plus
Query 52018 TGGCATATAATAACAGGATATAGTGTTAATGGTAGCATGCGTGTTTTGGGAACATGTAGT 52077
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 TGGCATATAGTAACAGGATATAGTGTTAATGGTAGCATGCGTGTTTTGGGAACATGTAGT 1395
Query 52078 GTTGGTTCGAGTCCAGCTATCCTGATGAGTGGTGTATAGTCCATATATGAAGTGCTAAGC 52137
||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||
Sbjct 1396 GTTGGTTCGAGTCCAGCTATCCTGATGAGTGGTGTATAGTCCATAGACGAAGTGTTAAGC 1455
Query 52138 TATTGCGCAGTACCTTGGCACAACTATACAAGAACCATATTGAACATAACTGGTGCATGG 52197
|| |||||||||||||| | |||||||||||| ||
Sbjct 1456 TA-------------TGGCACAACTATAC--------------AGATAACTGGTGCACGG 1488
Query 52198 TTATTAGGATATGGGGTCAGTTAACGGAAGACCTAGTGTATTAAAGTGTCACAGGCTCAA 52257
|||| |||| ||||| ||| ||||||||||||||||||||||||| ||
Sbjct 1489 TTAT-----------ATCAGCTAACGAAAGTCCTAGTGTATTAAAGTGTCACAGGCATAA 1537
Query 52258 TTAAGTGACAGCTGGTTAGAGTAATTGGAGGGATACGGATAGCAACCGTGTAGGGCTCGA 52317
|||||||||||||||||||||||| ||| ||| || | |||||||| ||||
Sbjct 1538 CTAAGTGACAGCTGGTTAGAGTAAT--AAGGTGTAC---TAAC-GTGGTGTAGGGTTCGA 1591
Query 52318 TTCCCTACTGCTCTAT 52333
||||||||||||||||
Sbjct 1592 TTCCCTACTGCTCTAT 1607
>seq10675
Length=2892
Score = 181 bits (200), Expect = 9e-41
Identities = 135/154 (88%), Gaps = 3/154 (2%)
Strand=Plus/Plus
Query 27237 CAATTAAAAGCAGaaatcaataaaaaa-tatcacttaatgcttgataaaaa-aataatat 27294
|||||||||| |||||| ||||||||| ||||| |||| |||| || | ||| | ||
Sbjct 377 CAATTAAAAGTAGAAATAAATAAAAAAATATCATCTAATATTTGACAACGATAATTA-AT 435
Query 27295 tttgatataataatatatatagaaataaaGGAGAACTAACACATGGTAGTTAAATTAACA 27354
|||| ||||||| |||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 436 TTTGGTATAATAGTATATATAGAAATAAAGGAGAACTAACAAATGGTAGTCAAATTAACG 495
Query 27355 CAAAAACAAGCTGATTATCTTAAAACTTTTGGAA 27388
||||||||||||||||||||| ||||||||||||
Sbjct 496 CAAAAACAAGCTGATTATCTTGAAACTTTTGGAA 529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 415664807228622
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |