Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq738 168 5e-37 >seq738 Length=407637 Score = 168 bits (186), Expect = 5e-37 Identities = 581/884 (66%), Gaps = 39/884 (4%) Strand=Plus/Minus Query 43709 TTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGG 43768 |||||||| ||| | || |||||| | | ||| ||| || | || || |||||| Sbjct 115168 TTTCCAATATTATACCCCGATATATGGTACAAGTATAAACAATCTGTAGCATCTTTTTGG 115109 Query 43769 ACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAA 43828 || ||||||| || ||| | |||| || | | ||||||| | | | || | Sbjct 115108 ACCACAGAAGAGGTCGATCTATCTAAGGATATTACTCATTGGAAGAAGCTGACATCAGAT 115049 Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 ||||||||||||||||| || | || ||||||||| | || || || | Sbjct 115048 GAAAAACATTTTATATCACATATTCTTGCATTTTTTGCTTCATCAGATACAATTGTTGGT 114989 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 || |||||| || | || |||||||| ||| | ||||| ||| ||| || Sbjct 114988 GATAATTTGATTGAAAGATTCATTCAAGAAGTACAAATCATTGAAGCTAGATTTTTCTAC 114929 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGAT-AGATAC 44007 | |||||| | | || |||||||| ||||| || ||||| || ||| | || ||| || Sbjct 114928 AGTTTTCAATTAACTATGGAAAATATACATTCAGAGATGTATAG-CTTATTATTAGAAAC 114870 Query 44008 GTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGC 44067 | ||| || | | ||||| ||| | ||||| || ||||| || | ||| | Sbjct 114869 TTTCATAGAATCTACAGATCAGAAGAATCATCTTTTTAACGCAATAGAGACCATCCCTTC 114810 Query 44068 GATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT--TCAAATGATTC---TTTT 44122 || | | | || | | ||||| ||||| ||| || ||||| |||| ||| Sbjct 114809 AATAAGAAAAAAGGGAATATGGGCAAATAAATATATATATGATCAAA--ATTCAAGTTTC 114752 Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 | ||| ||| | || ||||||||||| || ||||| |||||||| || || ||||| Sbjct 114751 GCAGAGCGATTGGTAGCGTTTGCAGTGGTTGAAGGGATTTTCTTCTCTGGGAGTTTTGCA 114692 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA--AATGAGT 44240 || ||||||||||| || || || | | ||||| || || || ||||| ||||| Sbjct 114691 GCAATATTTTGGTTGAAAAAGCGTAATATTATGCCAGGTTTAAC--TTTCAGTAATGAAC 114634 Query 44241 TAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTA-CTTGGATATCTA 44299 | |||||| | ||||| | ||||||||| || ||||| || | ||| | ||| || | Sbjct 114633 TTATAAGTAGAGATGAGGCCTTACATTGTGAATTTGCATGTCTCTTATATAGGAAATATT 114574 Query 44300 GGAGACGATAAGCCTTCATGTAAGACAA----TTA--CAGATATTGTTGTAGAGGCAGTA 44353 | || |||| | || | | ||| ||| || ||| | | || ||||| Sbjct 114573 TAAAAC-ATAA---ATTATCTGATTCAAAGGTTTATTCA-ATAATACAG--GAAGCAGTT 114521 Query 44354 AAGATAGAACAAGAATTTATGACAACAGCATTACCTGT--AAATTTAATAGGAATGAA-T 44410 | || ||| ||||||| ||||| ||||||| || |||||| |||| |||| | Sbjct 114520 GATATTGAAGGAGAATTTCTGACAGAGTCATTACCCGTTGAAATTT--TAGGTTTGAATT 114463 Query 44411 GAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGT 44470 | | | | |||| | ||||| || |||| ||| | ||| | | ||||| || Sbjct 114462 GCTCATCT-ATGATTAATTATATAAGATTTGTTGCTGATAGATTATTAATTGAACTTGGA 114404 Query 44471 TGCGAT--AAACA-CTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTG 44527 | || ||| | || | ||| || || || || ||||| ||||| |||||||| ||| Sbjct 114403 T---ATTCAAAGATTTACAATGTTCATAATCCTTTGGATTTCATGGATAATATTTCATTG 114347 Query 44528 GAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 || ||||| || |||||||| | || | |||||||| Sbjct 114346 ATTAATAAGACAAATTTCTTTGAAAAGAGGGTGAGTGAATATCA 114303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397230473280790