Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq293 131 2e-25
>seq293
Length=664131
Score = 131 bits (144), Expect = 2e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 79524 CTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCAC 79583
|||| ||| ||||||| ||| || || | |||||||||||| || || |||||||||||
Sbjct 206933 CTTGTTGCCTCCCTGGTCGACATAGCGCGACGTGTTGTTGAAGACACGCAGCATGGGCAC 206992
Query 79584 GATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGA 79643
|| ||||| || |||||| || ||| ||| | || || |||| ||| |
Sbjct 206993 GAGGCCGTTGGACGTGCCGTTGGTGCCGGCGATGTACGAGCCACTGGCCCTGATGCA-GT 207051
Query 79644 GCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCT 79702
||| ||| | || ||||| || | | |||| ||||| ||||||||| ||| || || |
Sbjct 207052 GCACGTGCAGGCCTATGCCTCCCGCCGACTTCGAGATCAGCGCGCACTGCTTCAGTGTGT 207111
Query 79703 CGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751
|||||||||| ||||| ||| |||| ||| || | |||||| |||||
Sbjct 207112 CGTAGATGCCTTCGATGCTGTCCTCCTGCATCGCTAGCAGGAAACAGCT 207160
Score = 111 bits (122), Expect = 2e-19
Identities = 160/223 (72%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312
||||||||||| | || ||| |||| |||||||| || ||||||||||| || || |||
Sbjct 207160 AGCTGTTTCCTGCTAGCGATGCAGGAGGACAGCATCGAAGGCATCTACGACACACTGAAG 207101
Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC-TGCTCGAATATCCG 19371
||||||||| ||||| |||| | | || || || || | ||| ||| | ||| |
Sbjct 207100 CAGTGCGCGCTGATCTCGAAGTCGGCGGGAGGCATAGGCCTGCACGTGCAC-TGCATCAG 207042
Query 19372 GTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCT 19431
| | ||||| | ||| || || ||||| || |||| |||| || |||||
Sbjct 207041 GGCCAGTGGCTCGTACATCGCCGGCACCAACGGCACGTCCAACGGCCTCGTGCCCATGCT 206982
Query 19432 CCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGC 19474
|| ||||||||||||||| | | || ||| ||||||| |||
Sbjct 206981 GCGTGTCTTCAACAACACGTCGCGCTATGTCGACCAGGGAGGC 206939
Score = 98.7 bits (108), Expect = 1e-15
Identities = 80/97 (82%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 20375 CGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAAC 20434
|||||||| |||| | || ||||||||||||||||| ||||| |||||| | || |||
Sbjct 199908 CGCAACTCACTGCTATTGGCTCCCATGCCGACCGCCTCCACCGCTCAGATCCTCGGCAAC 199849
Query 20435 AACGAGGCTTTCGAGCCGTACACGACCAACATCTACT 20471
|||||| | ||||||| ||||| ||||||||||||
Sbjct 199848 AACGAGTCAGTCGAGCCCTACACCTCCAACATCTACT 199812
Score = 91.5 bits (100), Expect = 2e-13
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593
||||||||||| ||||| ||||||| | ||||||||| || | |||||| ||||| ||
Sbjct 199813 GTAGATGTTGGAGGTGTAGGGCTCGACTGACTCGTTGTTGCCGAGGATCTGAGCGGTGGA 199872
Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATG 78638
||||||||||||||| || | || || || || || | |||||
Sbjct 199873 GGCGGTCGGCATGGGAGCCAATAGCAGTGAGTTGCGGACGCCATG 199917
Score = 89.7 bits (98), Expect = 6e-13
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157
||||| ||| |||||||||||||| ||||||| || || | ||||| |||||||
Sbjct 203979 CTCGACGATCTCTGTGCACAAATTGCTGCACTTGATTGTTCCCAGGTTCTGCTGGTTGGA 204038
Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTG 79211
||| |||| ||||||||||||| |||||| || || || ||||||| |||
Sbjct 204039 CTTGCGGTTAGCGGCGTCCTTGTAGAGCATGTAGGGTGTGCCCGTCTCAATCTG 204092
Score = 86.0 bits (94), Expect = 7e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 19487 GGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTG 19546
||| ||||||| |||||||| ||||| |||||||||||||| || ||||| || |||
Sbjct 205712 GGCGCGTTCGCGATCTACCTGGAGCCGTGGCACGCGGACGTTTACGAGTTCCTGGACCTG 205653
Query 19547 CGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATT 19606
|||| || | |||||| |||| |||||| | ||| || ||||| |
Sbjct 205652 AAGAAGAACACTGGAAAAGAGGAGGTGCGAGCTCGCGATTTGTTCTACGCACTGTGGGTG 205593
Query 19607 CCGGACCTATTCATG-GAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCA 19665
|| ||||| |||||| || | || ||| ||| || ||| ||| ||||| |||||
Sbjct 205592 CCCGACCTGTTCATGCGACGA-GTCGAGGCTGACCAAATGTGGAGCCTCATGTGTCCGCA 205534
Query 19666 CGAATGCCCTGGCCTACCCGACGT 19689
||| || || || || |||| ||
Sbjct 205533 CGACTGTCCCGGTCTCTCCGATGT 205510
Score = 84.2 bits (92), Expect = 2e-11
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 20071 GGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGA 20130
||||||||||||||| ||||| ||||||||||||| |||||| ||||||| |||||||
Sbjct 201366 GGCGCGCAAGTCGAACATGCGTCACCGGCCGATCGGCATCGGCATCCAGGGTTTGGCCGA 201307
Query 20131 CGTTTTCAT 20139
| | |||||
Sbjct 201306 CCTGTTCAT 201298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548205572279520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |