Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq293 131 2e-25 >seq293 Length=664131 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 79524 CTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCAC 79583 |||| ||| ||||||| ||| || || | |||||||||||| || || ||||||||||| Sbjct 206933 CTTGTTGCCTCCCTGGTCGACATAGCGCGACGTGTTGTTGAAGACACGCAGCATGGGCAC 206992 Query 79584 GATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGA 79643 || ||||| || |||||| || ||| ||| | || || |||| ||| | Sbjct 206993 GAGGCCGTTGGACGTGCCGTTGGTGCCGGCGATGTACGAGCCACTGGCCCTGATGCA-GT 207051 Query 79644 GCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCT 79702 ||| ||| | || ||||| || | | |||| ||||| ||||||||| ||| || || | Sbjct 207052 GCACGTGCAGGCCTATGCCTCCCGCCGACTTCGAGATCAGCGCGCACTGCTTCAGTGTGT 207111 Query 79703 CGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751 |||||||||| ||||| ||| |||| ||| || | |||||| ||||| Sbjct 207112 CGTAGATGCCTTCGATGCTGTCCTCCTGCATCGCTAGCAGGAAACAGCT 207160 Score = 111 bits (122), Expect = 2e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||||||||| | || ||| |||| |||||||| || ||||||||||| || || ||| Sbjct 207160 AGCTGTTTCCTGCTAGCGATGCAGGAGGACAGCATCGAAGGCATCTACGACACACTGAAG 207101 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC-TGCTCGAATATCCG 19371 ||||||||| ||||| |||| | | || || || || | ||| ||| | ||| | Sbjct 207100 CAGTGCGCGCTGATCTCGAAGTCGGCGGGAGGCATAGGCCTGCACGTGCAC-TGCATCAG 207042 Query 19372 GTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCT 19431 | | ||||| | ||| || || ||||| || |||| |||| || ||||| Sbjct 207041 GGCCAGTGGCTCGTACATCGCCGGCACCAACGGCACGTCCAACGGCCTCGTGCCCATGCT 206982 Query 19432 CCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGC 19474 || ||||||||||||||| | | || ||| ||||||| ||| Sbjct 206981 GCGTGTCTTCAACAACACGTCGCGCTATGTCGACCAGGGAGGC 206939 Score = 98.7 bits (108), Expect = 1e-15 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 20375 CGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAAC 20434 |||||||| |||| | || ||||||||||||||||| ||||| |||||| | || ||| Sbjct 199908 CGCAACTCACTGCTATTGGCTCCCATGCCGACCGCCTCCACCGCTCAGATCCTCGGCAAC 199849 Query 20435 AACGAGGCTTTCGAGCCGTACACGACCAACATCTACT 20471 |||||| | ||||||| ||||| |||||||||||| Sbjct 199848 AACGAGTCAGTCGAGCCCTACACCTCCAACATCTACT 199812 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||||||||||| ||||| ||||||| | ||||||||| || | |||||| ||||| || Sbjct 199813 GTAGATGTTGGAGGTGTAGGGCTCGACTGACTCGTTGTTGCCGAGGATCTGAGCGGTGGA 199872 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATG 78638 ||||||||||||||| || | || || || || || | ||||| Sbjct 199873 GGCGGTCGGCATGGGAGCCAATAGCAGTGAGTTGCGGACGCCATG 199917 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||||| ||| |||||||||||||| ||||||| || || | ||||| ||||||| Sbjct 203979 CTCGACGATCTCTGTGCACAAATTGCTGCACTTGATTGTTCCCAGGTTCTGCTGGTTGGA 204038 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTG 79211 ||| |||| ||||||||||||| |||||| || || || ||||||| ||| Sbjct 204039 CTTGCGGTTAGCGGCGTCCTTGTAGAGCATGTAGGGTGTGCCCGTCTCAATCTG 204092 Score = 86.0 bits (94), Expect = 7e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 19487 GGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTG 19546 ||| ||||||| |||||||| ||||| |||||||||||||| || ||||| || ||| Sbjct 205712 GGCGCGTTCGCGATCTACCTGGAGCCGTGGCACGCGGACGTTTACGAGTTCCTGGACCTG 205653 Query 19547 CGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATT 19606 |||| || | |||||| |||| |||||| | ||| || ||||| | Sbjct 205652 AAGAAGAACACTGGAAAAGAGGAGGTGCGAGCTCGCGATTTGTTCTACGCACTGTGGGTG 205593 Query 19607 CCGGACCTATTCATG-GAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCA 19665 || ||||| |||||| || | || ||| ||| || ||| ||| ||||| ||||| Sbjct 205592 CCCGACCTGTTCATGCGACGA-GTCGAGGCTGACCAAATGTGGAGCCTCATGTGTCCGCA 205534 Query 19666 CGAATGCCCTGGCCTACCCGACGT 19689 ||| || || || || |||| || Sbjct 205533 CGACTGTCCCGGTCTCTCCGATGT 205510 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 20071 GGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGA 20130 ||||||||||||||| ||||| ||||||||||||| |||||| ||||||| ||||||| Sbjct 201366 GGCGCGCAAGTCGAACATGCGTCACCGGCCGATCGGCATCGGCATCCAGGGTTTGGCCGA 201307 Query 20131 CGTTTTCAT 20139 | | ||||| Sbjct 201306 CCTGTTCAT 201298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548205572279520