Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq293 105 7e-18 seq649 100 3e-16 seq490 100 3e-16 seq1864 95.1 1e-14 seq3047 86.0 7e-12 >seq293 Length=664131 Score = 105 bits (116), Expect = 7e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 ||||| |||||| | |||||| |||| ||| ||||| ||||||||||| || || ||| Sbjct 207160 AGCTGTTTCCTGCTAGCGATGCAGGAGGACAGCATCGAAGGCATCTACGACACACTGAAG 207101 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCG 53448 |||| || | ||||| |||| | |||| || || || | ||| ||| | | || | Sbjct 207100 CAGTGCGCGCTGATCTCGAAGTCGGCGGGAGGCATAGGCCTGCACGTGCAC-TGCATCAG 207042 Query 53449 TGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCT 53508 || | ||| | ||| || || |||||| || | || ||||||| ||||| Sbjct 207041 GGCCAGTGGCTCGTACATCGCCGGCACCAACGGCACGTCCAACGGCCTCGTGCCCATGCT 206982 Query 53509 CCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || ||||||||||||||| | || || ||| ||||||| || Sbjct 206981 GCGTGTCTTCAACAACACGTCGCGCTATGTCGACCAGGGAGG 206940 Score = 98.7 bits (108), Expect = 1e-15 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| ||||| |||| || ||||| ||||| || || ||||||||| | Sbjct 199914 GGCGTCCGCAACTCACTGCTATTGGCTCCCATGCCGACCGCCTCCACCGCTCAGATCCTC 199855 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 |||||||||||| | ||||||| ||||| ||||||||||| Sbjct 199854 GGCAACAACGAGTCAGTCGAGCCCTACACCTCCAACATCTAC 199813 >seq649 Length=437485 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| || | || || || |||||||| || ||| ||||| || ||||| Sbjct 394659 GTGAAGATGTAACGCGGACTTGCGGCGTCCTTGCCGCCCTGCAGTCGCGTGCCGAACTGA 394600 Query 152089 CCAGAG-GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || ||| |||| | ||||||| ||||||| ||||||| | || || |||| || | Sbjct 394599 CC-GAGCGGCTGCAACAGGTTGATGTTGTTGCTGCCCACGTAGTTTTGCGCCAGGTTGAT 394541 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 || || | ||| | | ||||||||||| || |||| |||||| || | | || Sbjct 394540 GATGGTCGACATCAGTGACACCTCACCGTGGTGGTAGGCCGACTGCTCGGCCACCGACCC 394481 Query 152208 CGCCAACTGCGCCACCTTCATGTC 152231 |||| ||| |||||||| || || Sbjct 394480 GGCCAGCTGGGCCACCTTGATCTC 394457 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 119071 CGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTG 119130 ||| ||||| | ||| || ||||| ||||| ||||| |||||||||||||| | Sbjct 383329 CGAGCTGAAAATATTGCACAGTTTGGCTCCGTAGCCGTTGCGACCACCGGTCACCTTGTC 383270 Query 119131 CTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175 || ||||||||||| ||||||||||||| ||||| || ||||| Sbjct 383269 GTCTTCGTCGTTGTAATTGGAGCTGGTCAGCAGGTGGCCGAAGAT 383225 >seq490 Length=515312 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| || | || || || |||||||| || ||| ||||| || ||||| Sbjct 446774 GTGAAGATGTAACGTGGACTTGCGGCGTCCTTGCCGCCCTGCAGTCGCGTGCCGAACTGA 446833 Query 152089 CCAGAG-GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || ||| |||| | ||||||| ||||||| ||||||| | || || |||| || | Sbjct 446834 CC-GAGCGGCTGCAACAGGTTGATGTTGTTGCTGCCCACGTAGTTTTGCGCCAGGTTGAT 446892 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 || || | ||| | | ||||||||||| || |||| |||||| || | | || Sbjct 446893 GATGGTCGACATCAGTGACACCTCACCGTGGTGGTAGGCCGACTGCTCGGCCACCGACCC 446952 Query 152208 CGCCAACTGCGCCACCTTCATGTC 152231 |||| ||| |||||||| || || Sbjct 446953 GGCCAGCTGGGCCACCTTGATCTC 446976 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 119071 CGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTG 119130 ||| ||||| | ||| || ||||| ||||| ||||| ||||||||||| || | Sbjct 456586 CGAGCTGAAAATATTGCACAGTTTGGCTCCGTAGCCGTTGCGACCACCGGTGACCTTGTC 456645 Query 119131 CTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175 || ||||||||||| ||||||||||||| ||||| || ||||| Sbjct 456646 GTCTTCGTCGTTGTAATTGGAGCTGGTCAGCAGGTGGCCGAAGAT 456690 >seq1864 Length=188450 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| || | || || || |||||||| || || ||||| || ||||| Sbjct 142258 GTGAAGATGTAACGCGGACTTGCGGCGTCCTTGCCGCCCTGCAATCGCGTGCCGAACTGA 142317 Query 152089 CCAGAG-GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || ||| |||| | ||||||| ||||||| |||||| | ||||| |||| || | Sbjct 142318 CC-GAGCGGCTGCAACAGGTTGATGTTGTTGCTGCCCACATAGTTCTGCGCCAGGTTGAT 142376 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 || || | ||| | | ||||||||||| || |||| |||||| || | | || Sbjct 142377 GATGGTCGACATCAGTGACACCTCACCGTGGTGGTAGGCCGACTGCTCGGCCACCGACCC 142436 Query 152208 CGCCAACTGCGCCACCTTCATGTC 152231 |||| ||| |||||||| || || Sbjct 142437 GGCCAGCTGGGCCACCTTGATCTC 142460 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 119071 CGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTG 119130 ||| ||||| | ||| || ||||| ||||| ||||| |||||||||||||| | Sbjct 136881 CGAGCTGAAAATATTGCACAGTTTGGCTCCGTAGCCGTTGCGACCACCGGTCACCTTGTC 136940 Query 119131 CTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175 || ||||||||||| ||||||||||||| ||||| || ||||| Sbjct 136941 GTCTTCGTCGTTGTAATTGGAGCTGGTCAGCAGGTGGCCGAAGAT 136985 >seq3047 Length=83228 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 119071 CGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTG 119130 ||| ||||| | ||| || ||||| ||||| ||||| |||||||||||||| | Sbjct 3743 CGAGCTGAAAATATTGCACAGTTTGGCTCCGTAGCCGTTGCGACCACCGGTCACCTTGTC 3802 Query 119131 CTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175 || ||||||||||| ||||||||||||| ||||| || ||||| Sbjct 3803 GTCTTCGTCGTTGTAATTGGAGCTGGTCAGCAGGTGGCCGAAGAT 3847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546897533968400