Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq293 105 7e-18
seq649 100 3e-16
seq490 100 3e-16
seq1864 95.1 1e-14
seq3047 86.0 7e-12
>seq293
Length=664131
Score = 105 bits (116), Expect = 7e-18
Identities = 158/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389
||||| |||||| | |||||| |||| ||| ||||| ||||||||||| || || |||
Sbjct 207160 AGCTGTTTCCTGCTAGCGATGCAGGAGGACAGCATCGAAGGCATCTACGACACACTGAAG 207101
Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCG 53448
|||| || | ||||| |||| | |||| || || || | ||| ||| | | || |
Sbjct 207100 CAGTGCGCGCTGATCTCGAAGTCGGCGGGAGGCATAGGCCTGCACGTGCAC-TGCATCAG 207042
Query 53449 TGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCT 53508
|| | ||| | ||| || || |||||| || | || ||||||| |||||
Sbjct 207041 GGCCAGTGGCTCGTACATCGCCGGCACCAACGGCACGTCCAACGGCCTCGTGCCCATGCT 206982
Query 53509 CCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
|| ||||||||||||||| | || || ||| ||||||| ||
Sbjct 206981 GCGTGTCTTCAACAACACGTCGCGCTATGTCGACCAGGGAGG 206940
Score = 98.7 bits (108), Expect = 1e-15
Identities = 83/102 (81%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537
||| | |||||||| ||||| |||| || ||||| ||||| || || ||||||||| |
Sbjct 199914 GGCGTCCGCAACTCACTGCTATTGGCTCCCATGCCGACCGCCTCCACCGCTCAGATCCTC 199855
Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579
|||||||||||| | ||||||| ||||| |||||||||||
Sbjct 199854 GGCAACAACGAGTCAGTCGAGCCCTACACCTCCAACATCTAC 199813
>seq649
Length=437485
Score = 100 bits (110), Expect = 3e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||||||||| || | || || || |||||||| || ||| ||||| || |||||
Sbjct 394659 GTGAAGATGTAACGCGGACTTGCGGCGTCCTTGCCGCCCTGCAGTCGCGTGCCGAACTGA 394600
Query 152089 CCAGAG-GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147
|| ||| |||| | ||||||| ||||||| ||||||| | || || |||| || |
Sbjct 394599 CC-GAGCGGCTGCAACAGGTTGATGTTGTTGCTGCCCACGTAGTTTTGCGCCAGGTTGAT 394541
Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207
|| || | ||| | | ||||||||||| || |||| |||||| || | | ||
Sbjct 394540 GATGGTCGACATCAGTGACACCTCACCGTGGTGGTAGGCCGACTGCTCGGCCACCGACCC 394481
Query 152208 CGCCAACTGCGCCACCTTCATGTC 152231
|||| ||| |||||||| || ||
Sbjct 394480 GGCCAGCTGGGCCACCTTGATCTC 394457
Score = 86.0 bits (94), Expect = 7e-12
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 119071 CGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTG 119130
||| ||||| | ||| || ||||| ||||| ||||| |||||||||||||| |
Sbjct 383329 CGAGCTGAAAATATTGCACAGTTTGGCTCCGTAGCCGTTGCGACCACCGGTCACCTTGTC 383270
Query 119131 CTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175
|| ||||||||||| ||||||||||||| ||||| || |||||
Sbjct 383269 GTCTTCGTCGTTGTAATTGGAGCTGGTCAGCAGGTGGCCGAAGAT 383225
>seq490
Length=515312
Score = 100 bits (110), Expect = 3e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||||||||| || | || || || |||||||| || ||| ||||| || |||||
Sbjct 446774 GTGAAGATGTAACGTGGACTTGCGGCGTCCTTGCCGCCCTGCAGTCGCGTGCCGAACTGA 446833
Query 152089 CCAGAG-GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147
|| ||| |||| | ||||||| ||||||| ||||||| | || || |||| || |
Sbjct 446834 CC-GAGCGGCTGCAACAGGTTGATGTTGTTGCTGCCCACGTAGTTTTGCGCCAGGTTGAT 446892
Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207
|| || | ||| | | ||||||||||| || |||| |||||| || | | ||
Sbjct 446893 GATGGTCGACATCAGTGACACCTCACCGTGGTGGTAGGCCGACTGCTCGGCCACCGACCC 446952
Query 152208 CGCCAACTGCGCCACCTTCATGTC 152231
|||| ||| |||||||| || ||
Sbjct 446953 GGCCAGCTGGGCCACCTTGATCTC 446976
Score = 82.4 bits (90), Expect = 8e-11
Identities = 81/105 (77%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 119071 CGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTG 119130
||| ||||| | ||| || ||||| ||||| ||||| ||||||||||| || |
Sbjct 456586 CGAGCTGAAAATATTGCACAGTTTGGCTCCGTAGCCGTTGCGACCACCGGTGACCTTGTC 456645
Query 119131 CTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175
|| ||||||||||| ||||||||||||| ||||| || |||||
Sbjct 456646 GTCTTCGTCGTTGTAATTGGAGCTGGTCAGCAGGTGGCCGAAGAT 456690
>seq1864
Length=188450
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||||||||| || | || || || |||||||| || || ||||| || |||||
Sbjct 142258 GTGAAGATGTAACGCGGACTTGCGGCGTCCTTGCCGCCCTGCAATCGCGTGCCGAACTGA 142317
Query 152089 CCAGAG-GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147
|| ||| |||| | ||||||| ||||||| |||||| | ||||| |||| || |
Sbjct 142318 CC-GAGCGGCTGCAACAGGTTGATGTTGTTGCTGCCCACATAGTTCTGCGCCAGGTTGAT 142376
Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207
|| || | ||| | | ||||||||||| || |||| |||||| || | | ||
Sbjct 142377 GATGGTCGACATCAGTGACACCTCACCGTGGTGGTAGGCCGACTGCTCGGCCACCGACCC 142436
Query 152208 CGCCAACTGCGCCACCTTCATGTC 152231
|||| ||| |||||||| || ||
Sbjct 142437 GGCCAGCTGGGCCACCTTGATCTC 142460
Score = 86.0 bits (94), Expect = 7e-12
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 119071 CGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTG 119130
||| ||||| | ||| || ||||| ||||| ||||| |||||||||||||| |
Sbjct 136881 CGAGCTGAAAATATTGCACAGTTTGGCTCCGTAGCCGTTGCGACCACCGGTCACCTTGTC 136940
Query 119131 CTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175
|| ||||||||||| ||||||||||||| ||||| || |||||
Sbjct 136941 GTCTTCGTCGTTGTAATTGGAGCTGGTCAGCAGGTGGCCGAAGAT 136985
>seq3047
Length=83228
Score = 86.0 bits (94), Expect = 7e-12
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 119071 CGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTG 119130
||| ||||| | ||| || ||||| ||||| ||||| |||||||||||||| |
Sbjct 3743 CGAGCTGAAAATATTGCACAGTTTGGCTCCGTAGCCGTTGCGACCACCGGTCACCTTGTC 3802
Query 119131 CTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175
|| ||||||||||| ||||||||||||| ||||| || |||||
Sbjct 3803 GTCTTCGTCGTTGTAATTGGAGCTGGTCAGCAGGTGGCCGAAGAT 3847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546897533968400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |