Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq1173 111 3e-20 seq45868 84.2 4e-12 >seq1173 Length=295699 Score = 111 bits (122), Expect = 3e-20 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 22015 GAGGGGGATACACTGGTGGTCTGGAAGCTGGACAGGCTGGGGCGTAATATGCGGCATCTG 22074 ||||| ||||| ||||| || ||||| || || | ||||| |||| | || || Sbjct 93601 GAGGGCGATACGCTGGTTGTATGGAAACTCGATCGTCTGGGTCGTAGCGTAAAACAGCTT 93542 Query 22075 GTCATTCTGGTTGAGGAACTGCGCGAACGCGGCGTTAATTTTCGCAGCCTGACGGATGCT 22134 || | | | || || |||| | ||| ||| || | || || || ||||||||| Sbjct 93541 GTTGATATCGCTGGAGAGCTGCACAAACAGGGCATTCAGTTCAAAAGTCTCACGGATGCT 93482 Query 22135 ATTGATACCAGCACGCCGATGGGGCGTTTTTTCTTTCATGTGATGGGTGCCCTGGCTGAA 22194 ||||||||| | || ||| ||||||||||||||| ||||| |||| | ||| || ||| Sbjct 93481 ATTGATACCGGAACACCGTCGGGGCGTTTTTTCTTCCATGTTATGGCTAGCCTTGCAGAA 93422 Query 22195 ATGGAACGAGAACTCATTGTCGAGCGGACTCGGGCCGGGCTGGA 22238 ||||| ||||| | || |||| || || ||||| || || || Sbjct 93421 ATGGAGCGAGAGTTGATAATCGAACGTACGCGGGCAGGTCTTGA 93378 >seq45868 Length=467 Score = 84.2 bits (92), Expect = 4e-12 Identities = 119/166 (72%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 22109 TTAATTTTCGCAGCCTGACGGATGCTATTGATACCAGCACGCCGATGGGGCGTTTTTTCT 22168 || |||||| || |||||||| |||| || || || | || |||||||||| Sbjct 1 TTCATTTTCATAGTTTGACGGATTCTATCGACACTGCTTCGTCAGCAGGTCGTTTTTTCT 60 Query 22169 TTCATGTGATGGGTGCCCTGGCTGAAATGGA-ACGAGAACTCATTGTCGAGCGGACTCGG 22227 ||||||||||| |||| |||| ||||||| ||||| || ||||| | || |||| | Sbjct 61 TTCATGTGATGAGTGCGTTGGCGCAAATGGAGCCGAGAGCTGATTGTTAAACGTACTCAG 120 Query 22228 GCCGGGCTGGAAGCGGCCAGAGCCAAAGGTCGTATTGGTGGCAGAC 22273 || || ||| || || ||| || ||| ||||| || || |||| Sbjct 121 GCAGGTTTGGCCGCAGCGAGAAGCAGAGGACGTATCGGCGGTAGAC 166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93385141012404