Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1979 93.3 3e-14 seq1320 86.0 4e-12 >seq1979 Length=171087 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 ||||| |||||||||||||| || || |||||||| || ||||| |||| |||||| | Sbjct 87851 CCGCCCGATCAACAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTG 87792 Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| |||||||| || || ||||| ||| | ||| | || | ||| |||| ||||| Sbjct 87791 TCCGACTACAACATCCAGAAGGAGTCGACACTGCATCTCGTGCTCAGGCTGCGCGGAGG 87733 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 ||||| |||||||||||||| || || |||||||| || ||||| |||| |||||| | Sbjct 152656 CCGCCCGATCAACAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTG 152597 Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| |||||||| || || ||||| ||| | ||| | || | ||| |||| ||||| Sbjct 152596 TCCGACTACAACATCCAGAAGGAGTCGACACTGCATCTCGTGCTCAGGCTGCGCGGAGG 152538 >seq1320 Length=267419 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || ||||| || || || || |||||||| ||||| || | | Sbjct 96342 AATGCAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAAGTCGAGCCATC 96401 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || | ||||| || || || || | || || || | Sbjct 96402 TGACACCATTGAGAATGTGAAGGC-GAAAATCCAGGATAAGGAGGGAATTCCACCTGACC 96460 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||| | || || || || || || ||||||||| || ||| | ||| || | Sbjct 96461 AGCAGCGTCTGATCTTCGCAGGAAAGCAGTTGGAAGACGGTCGTACTCTGTCCGACTATA 96520 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || || || |||||||| Sbjct 96521 ATATCCAGAAGGAGTCCAC 96539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337817804691464