Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq1979 93.3 3e-14
seq1320 86.0 4e-12
>seq1979
Length=171087
Score = 93.3 bits (102), Expect = 3e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778
||||| |||||||||||||| || || |||||||| || ||||| |||| |||||| |
Sbjct 87851 CCGCCCGATCAACAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTG 87792
Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
||| |||||||| || || ||||| ||| | ||| | || | ||| |||| |||||
Sbjct 87791 TCCGACTACAACATCCAGAAGGAGTCGACACTGCATCTCGTGCTCAGGCTGCGCGGAGG 87733
Score = 93.3 bits (102), Expect = 3e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778
||||| |||||||||||||| || || |||||||| || ||||| |||| |||||| |
Sbjct 152656 CCGCCCGATCAACAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTG 152597
Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
||| |||||||| || || ||||| ||| | ||| | || | ||| |||| |||||
Sbjct 152596 TCCGACTACAACATCCAGAAGGAGTCGACACTGCATCTCGTGCTCAGGCTGCGCGGAGG 152538
>seq1320
Length=267419
Score = 86.0 bits (94), Expect = 4e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||||||||| || ||||| || || || || |||||||| ||||| || | |
Sbjct 96342 AATGCAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAAGTCGAGCCATC 96401
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
||||| |||| ||| | || | ||||| || || || || | || || || |
Sbjct 96402 TGACACCATTGAGAATGTGAAGGC-GAAAATCCAGGATAAGGAGGGAATTCCACCTGACC 96460
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| |||||| | || || || || || || ||||||||| || ||| | ||| || |
Sbjct 96461 AGCAGCGTCTGATCTTCGCAGGAAAGCAGTTGGAAGACGGTCGTACTCTGTCCGACTATA 96520
Query 23789 ACATACAAAAAGAGTCCAC 23807
| || || || ||||||||
Sbjct 96521 ATATCCAGAAGGAGTCCAC 96539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337817804691464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |