Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq738 215 4e-51
seq2120 114 1e-20
>seq738
Length=407637
Score = 215 bits (238), Expect = 4e-51
Identities = 575/866 (66%), Gaps = 17/866 (2%)
Strand=Plus/Plus
Query 4255 ATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATAT 4314
||||||| ||||| || | |||||| |||||||| || || || |||||||
Sbjct 114298 ATTTTTGATATTCACTCACCCTCTTTTCAAAGAAATTTGTCTTATTAATCAATGAAATAT 114357
Query 4315 TTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAA 4374
| ||||| ||||| || |||||| | |||||| ||| | | || | | |
Sbjct 114358 TATCCATGAAATCCAAAGGATTATGAACATTGTAAATCTTTGAATATCCAAGTTCAATTA 114417
Query 4375 GCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA 4434
|||| ||||| |||||| |||||| | |||| | ||| || | || | |
Sbjct 114418 ATAATCTATCAGCAACAAATCTTATATAATTAATCATAGATGAGCAATTCAAACCTAA-A 114476
Query 4435 ATCTCA-CAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTC-TGTGAT 4492
|| ||| | |||| | | ||||| ||| ||| ||| ||| || ||||| ||| ||
Sbjct 114477 ATTTCAACGGGTAATGACTCTGTCAGAAATTCTCCTTCAATATCAACTGCTTCCTGT-AT 114535
Query 4493 TATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTAT---CCAAACAATAAACA 4549
||| | | || | |||| ||||| | ||| ||| | | | || | |||
Sbjct 114536 TATTGAATAAACCTTTGAATCAGATAATTTATGTTTTAAATATTTCCTATATAAGAGACA 114595
Query 4550 CGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCC 4609
||||| |||||||| || | || ||||| || || ||||| ||| || ||||| ||
Sbjct 114596 TGCAAATTCACAATGTAAGGCCTCATCTCTACTTATAAGTTCATTACTGAAAGTTAAACC 114655
Query 4610 GGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATAT 4669
||||| | | | |||||| | ||||||||| || ||||| |||||| ||||| ||
Sbjct 114656 TGGCATAATATTACGCTTTTTCAACCAAAATATTGCTGCAAAACTCCCAGAGAAGAAAAT 114715
Query 4670 GCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG--TCTTTA 4727
||||| || | ||||||||||| ||||| |||| | || ||| || |
Sbjct 114716 CCCTTCAACCACTGCAAACGCTACCAATCGCTCTGCGAA--ACTTGAATTTTGATCATAT 114773
Query 4728 ATCCATTTTAATGCCCAG-TTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786
|| |||| |||||| || ||||||||||| | | ||| | || | ||| |||||
Sbjct 114774 ATATATTTATTTGCCCATATTCCCTTTTTTCTTATTGAAGGGA-TGGTCTCTATTGCGTT 114832
Query 4787 AAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846
||| | | | | || | | || || || |||| |||| || || |||||||||
Sbjct 114833 AAAAAGATGATTCTTCTGATCTGTAGATTCTATGAAAGTTTCTAATAATAAGCTATACAT 114892
Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTAC 4906
|| |||||||||||||| |||| | ||||| | ||| || |||||||||| | |
Sbjct 114893 CTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATCTAGCTTCAATGAT 114952
Query 4907 TTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG--GCT 4964
||| ||||| | | |||||||| | || || || || || || ||| |
Sbjct 114953 TTGTACTTCTTGAATGAATCTTTCAATCAAATTATCACCAACAAT--TGTATCTGATGAA 115010
Query 4965 GCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAG 5024
|||||||| || | || ||| |||||||| | | ||| || | | || || |||||
Sbjct 115011 GCAAAAAATGCAAGAATATGTGATATAAAATGTTTTTCATCTGATGTCAGCTTCTTCCAA 115070
Query 5025 TGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTT 5084
|| | | ||| |||| || ||| || ||||| |||||||| || ||| | | || |
Sbjct 115071 TGAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAAAAAGATGCTACAGATTGT 115130
Query 5085 TTGTACATAGACCAAATATCAGGATA 5110
|| ||| | |||| ||||| || ||
Sbjct 115131 TTATACTTGTACCATATATCGGGGTA 115156
>seq2120
Length=154726
Score = 114 bits (126), Expect = 1e-20
Identities = 201/291 (69%), Gaps = 4/291 (1%)
Strand=Plus/Minus
Query 4822 AAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATC 4881
|||| |||| || || ||||||||| || |||||||||||||| |||| | ||||| |
Sbjct 146072 AAGTTTCTAATAATAAGCTATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAAC 146013
Query 4882 CGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTT 4941
||| || |||||||||| | | ||| ||||| | | |||||||| | || || |
Sbjct 146012 TGTAGAAAAATCTAGCTTCAATGATTTGTACTTCTTGAATGAATCTTTCAATCAAATTAT 145953
Query 4942 CGTTTACTATACCGTCACTG--GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTG 4999
| || || || ||| | |||||||| || | || ||| |||||||| | |
Sbjct 145952 CACCAACAAT--TGTATCTGATGAAGCAAAAAATGCAAGAATATGTGATATAAAATGTTT 145895
Query 5000 TTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAAC 5059
||| || | | || || ||||| || | | ||| |||| || ||| || |||||
Sbjct 145894 TTCATCTGATGTCAGCTTCTTCCAATGAGTAATATCCTTAGATAGATCGACCTCTTCTGT 145835
Query 5060 AGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATA 5110
||||| || || ||| | | || ||| ||| | |||| ||||| || ||
Sbjct 145834 GGTCCAGAAAGATGCTACAGATTGTTTATACTTGTACCATATATCGGGGTA 145784
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426807281113814
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |