Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq738 215 4e-51 seq2120 114 1e-20 >seq738 Length=407637 Score = 215 bits (238), Expect = 4e-51 Identities = 575/866 (66%), Gaps = 17/866 (2%) Strand=Plus/Plus Query 4255 ATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATAT 4314 ||||||| ||||| || | |||||| |||||||| || || || ||||||| Sbjct 114298 ATTTTTGATATTCACTCACCCTCTTTTCAAAGAAATTTGTCTTATTAATCAATGAAATAT 114357 Query 4315 TTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAA 4374 | ||||| ||||| || |||||| | |||||| ||| | | || | | | Sbjct 114358 TATCCATGAAATCCAAAGGATTATGAACATTGTAAATCTTTGAATATCCAAGTTCAATTA 114417 Query 4375 GCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA 4434 |||| ||||| |||||| |||||| | |||| | ||| || | || | | Sbjct 114418 ATAATCTATCAGCAACAAATCTTATATAATTAATCATAGATGAGCAATTCAAACCTAA-A 114476 Query 4435 ATCTCA-CAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTC-TGTGAT 4492 || ||| | |||| | | ||||| ||| ||| ||| ||| || ||||| ||| || Sbjct 114477 ATTTCAACGGGTAATGACTCTGTCAGAAATTCTCCTTCAATATCAACTGCTTCCTGT-AT 114535 Query 4493 TATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTAT---CCAAACAATAAACA 4549 ||| | | || | |||| ||||| | ||| ||| | | | || | ||| Sbjct 114536 TATTGAATAAACCTTTGAATCAGATAATTTATGTTTTAAATATTTCCTATATAAGAGACA 114595 Query 4550 CGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCC 4609 ||||| |||||||| || | || ||||| || || ||||| ||| || ||||| || Sbjct 114596 TGCAAATTCACAATGTAAGGCCTCATCTCTACTTATAAGTTCATTACTGAAAGTTAAACC 114655 Query 4610 GGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATAT 4669 ||||| | | | |||||| | ||||||||| || ||||| |||||| ||||| || Sbjct 114656 TGGCATAATATTACGCTTTTTCAACCAAAATATTGCTGCAAAACTCCCAGAGAAGAAAAT 114715 Query 4670 GCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG--TCTTTA 4727 ||||| || | ||||||||||| ||||| |||| | || ||| || | Sbjct 114716 CCCTTCAACCACTGCAAACGCTACCAATCGCTCTGCGAA--ACTTGAATTTTGATCATAT 114773 Query 4728 ATCCATTTTAATGCCCAG-TTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 || |||| |||||| || ||||||||||| | | ||| | || | ||| ||||| Sbjct 114774 ATATATTTATTTGCCCATATTCCCTTTTTTCTTATTGAAGGGA-TGGTCTCTATTGCGTT 114832 Query 4787 AAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846 ||| | | | | || | | || || || |||| |||| || || ||||||||| Sbjct 114833 AAAAAGATGATTCTTCTGATCTGTAGATTCTATGAAAGTTTCTAATAATAAGCTATACAT 114892 Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTAC 4906 || |||||||||||||| |||| | ||||| | ||| || |||||||||| | | Sbjct 114893 CTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATCTAGCTTCAATGAT 114952 Query 4907 TTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG--GCT 4964 ||| ||||| | | |||||||| | || || || || || || ||| | Sbjct 114953 TTGTACTTCTTGAATGAATCTTTCAATCAAATTATCACCAACAAT--TGTATCTGATGAA 115010 Query 4965 GCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAG 5024 |||||||| || | || ||| |||||||| | | ||| || | | || || ||||| Sbjct 115011 GCAAAAAATGCAAGAATATGTGATATAAAATGTTTTTCATCTGATGTCAGCTTCTTCCAA 115070 Query 5025 TGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTT 5084 || | | ||| |||| || ||| || ||||| |||||||| || ||| | | || | Sbjct 115071 TGAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAAAAAGATGCTACAGATTGT 115130 Query 5085 TTGTACATAGACCAAATATCAGGATA 5110 || ||| | |||| ||||| || || Sbjct 115131 TTATACTTGTACCATATATCGGGGTA 115156 >seq2120 Length=154726 Score = 114 bits (126), Expect = 1e-20 Identities = 201/291 (69%), Gaps = 4/291 (1%) Strand=Plus/Minus Query 4822 AAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATC 4881 |||| |||| || || ||||||||| || |||||||||||||| |||| | ||||| | Sbjct 146072 AAGTTTCTAATAATAAGCTATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAAC 146013 Query 4882 CGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTT 4941 ||| || |||||||||| | | ||| ||||| | | |||||||| | || || | Sbjct 146012 TGTAGAAAAATCTAGCTTCAATGATTTGTACTTCTTGAATGAATCTTTCAATCAAATTAT 145953 Query 4942 CGTTTACTATACCGTCACTG--GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTG 4999 | || || || ||| | |||||||| || | || ||| |||||||| | | Sbjct 145952 CACCAACAAT--TGTATCTGATGAAGCAAAAAATGCAAGAATATGTGATATAAAATGTTT 145895 Query 5000 TTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAAC 5059 ||| || | | || || ||||| || | | ||| |||| || ||| || ||||| Sbjct 145894 TTCATCTGATGTCAGCTTCTTCCAATGAGTAATATCCTTAGATAGATCGACCTCTTCTGT 145835 Query 5060 AGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATA 5110 ||||| || || ||| | | || ||| ||| | |||| ||||| || || Sbjct 145834 GGTCCAGAAAGATGCTACAGATTGTTTATACTTGTACCATATATCGGGGTA 145784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426807281113814