Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_031017.1
Length=32409
Score E
Sequences producing significant alignments: (Bits) Value
seq13052 331 2e-86
seq12081 129 1e-25
>seq13052
Length=1690
Score = 331 bits (366), Expect = 2e-86
Identities = 246/288 (85%), Gaps = 0/288 (0%)
Strand=Plus/Minus
Query 28905 AAGGGAGAATTCACGCTTATAATTCCTACTGAGATGACAGTATCAGGATTAATAAAATCA 28964
|||||||| || | | |||||||||| || ||||||| | | ||| | || || |
Sbjct 1668 AAGGGAGAGTTTATTTTAGTAATTCCTACCGAAATGACAGAAACTGGAGTTATTGAAGCG 1609
Query 28965 AATTTAATACTCCTCAATGAAGATAAAGAACAAGTTATTGTCAGTAAGAATTTAACATTT 29024
|| |||||||| ||||||||||||||||| || ||||| ||||| ||||| | || |||
Sbjct 1608 AACTTAATACTTCTCAATGAAGATAAAGAGCAGGTTATCGTCAGCAAGAACCTTACGTTT 1549
Query 29025 ATATCAGATGATTCTACAGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGAT 29084
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 ATATCAGATAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGAT 1489
Query 29085 TTTACAAAATTATTATTGGGGAAAATGCCACAAGTGTTGCGTAGTGAGTTGAATGACTTA 29144
||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 1488 TTTACAAAATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTGAATGACTTA 1429
Query 29145 CACGCTCAAACTGAATCAAATACAAGCAACATCGAGCTTAAAGCAAAT 29192
|| ||||||||||||||||| | ||||| || ||||||||||| |||
Sbjct 1428 CATGCTCAAACTGAATCAAACAAGAGCAATATTGAGCTTAAAGCCAAT 1381
Score = 145 bits (160), Expect = 2e-30
Identities = 97/108 (90%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 29565 TTAATCACAAATCAAAATGTGACAACTGCTCAAACAACAGCAAATCAAGCTAAAACTGAT 29624
|||||||||||||||||||| |||||||||||| ||||||||| |||||| ||| |||
Sbjct 1299 TTAATCACAAATCAAAATGTAACAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAA 1240
Query 29625 GCCCAAGCTGCAATGACAAAGGCTACCGAAGCACAAGCGAACAGTTTA 29672
||| || ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1239 GCCAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCGAACAGTTTA 1192
>seq12081
Length=2162
Score = 129 bits (142), Expect = 1e-25
Identities = 84/92 (91%), Gaps = 3/92 (3%)
Strand=Plus/Minus
Query 30245 ATATACGACTGGGACATGGCAAAATATTGGTTCAGCAGTAATTGGTTCAACAACAATATA 30304
||||| || || ||||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 1970 ATATAGGATTG---CATGGCAAAATATCGGTTCGGTAGTAATTGGTTCAACAACAATATA 1914
Query 30305 TTATTGGAAACGCACTGCATaaaaaataaaaa 30336
||||||||||||||||||||||||||||||||
Sbjct 1913 TTATTGGAAACGCACTGCATAAAAAATAAAAA 1882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 103529929097316
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |