Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_031017.1 Length=32409 Score E Sequences producing significant alignments: (Bits) Value seq13052 331 2e-86 seq12081 129 1e-25 >seq13052 Length=1690 Score = 331 bits (366), Expect = 2e-86 Identities = 246/288 (85%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 28905 AAGGGAGAATTCACGCTTATAATTCCTACTGAGATGACAGTATCAGGATTAATAAAATCA 28964 |||||||| || | | |||||||||| || ||||||| | | ||| | || || | Sbjct 1668 AAGGGAGAGTTTATTTTAGTAATTCCTACCGAAATGACAGAAACTGGAGTTATTGAAGCG 1609 Query 28965 AATTTAATACTCCTCAATGAAGATAAAGAACAAGTTATTGTCAGTAAGAATTTAACATTT 29024 || |||||||| ||||||||||||||||| || ||||| ||||| ||||| | || ||| Sbjct 1608 AACTTAATACTTCTCAATGAAGATAAAGAGCAGGTTATCGTCAGCAAGAACCTTACGTTT 1549 Query 29025 ATATCAGATGATTCTACAGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGAT 29084 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1548 ATATCAGATAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGAT 1489 Query 29085 TTTACAAAATTATTATTGGGGAAAATGCCACAAGTGTTGCGTAGTGAGTTGAATGACTTA 29144 ||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| Sbjct 1488 TTTACAAAATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTGAATGACTTA 1429 Query 29145 CACGCTCAAACTGAATCAAATACAAGCAACATCGAGCTTAAAGCAAAT 29192 || ||||||||||||||||| | ||||| || ||||||||||| ||| Sbjct 1428 CATGCTCAAACTGAATCAAACAAGAGCAATATTGAGCTTAAAGCCAAT 1381 Score = 145 bits (160), Expect = 2e-30 Identities = 97/108 (90%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 29565 TTAATCACAAATCAAAATGTGACAACTGCTCAAACAACAGCAAATCAAGCTAAAACTGAT 29624 |||||||||||||||||||| |||||||||||| ||||||||| |||||| ||| ||| Sbjct 1299 TTAATCACAAATCAAAATGTAACAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAA 1240 Query 29625 GCCCAAGCTGCAATGACAAAGGCTACCGAAGCACAAGCGAACAGTTTA 29672 ||| || ||||||| |||||||||||||||||||||||||||||||| Sbjct 1239 GCCAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCGAACAGTTTA 1192 >seq12081 Length=2162 Score = 129 bits (142), Expect = 1e-25 Identities = 84/92 (91%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 30245 ATATACGACTGGGACATGGCAAAATATTGGTTCAGCAGTAATTGGTTCAACAACAATATA 30304 ||||| || || ||||||||||||| ||||| | |||||||||||||||||||||||| Sbjct 1970 ATATAGGATTG---CATGGCAAAATATCGGTTCGGTAGTAATTGGTTCAACAACAATATA 1914 Query 30305 TTATTGGAAACGCACTGCATaaaaaataaaaa 30336 |||||||||||||||||||||||||||||||| Sbjct 1913 TTATTGGAAACGCACTGCATAAAAAATAAAAA 1882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103529929097316