Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_031028.1 Length=45285 Score E Sequences producing significant alignments: (Bits) Value seq6496 113 1e-20 >seq6496 Length=10970 Score = 113 bits (124), Expect = 1e-20 Identities = 298/448 (67%), Gaps = 8/448 (2%) Strand=Plus/Minus Query 10310 ACTCGAACGAGGCCTTCGACCTGCTGACTCGTGGTTTCCAGCAGGGG-GTGGACAAGGGC 10368 ||||| | ||||||||||| | || | || | || ||| || ||| || || | Sbjct 10562 ACTCGCAGGAGGCCTTCGATATCCTCGC-CGCCGCCGCCCGCAACGGCGTGAACCGGGCC 10504 Query 10369 GAGGACTTCCTGGACACCCTGACCGAGTACCCGACGCTGTTCA--AGGCCTTGGGCCTGT 10426 ||||| |||| ||||| | || ||||||||| || || | || | || || Sbjct 10503 GAGGATCTCCTCGACACATTCACGGAGTACCCGGTCGTGCTCCGCAAGC--TCGGTCTCG 10446 Query 10427 CCGGCCAGGAAGCGACCGGCCTGCTCTCGCAAGGTCTGGCCGCTGGTGCGCGCAACTCCG 10486 ||| ||| | | |||||| ||| || || || | || || ||||||||| || Sbjct 10445 ACGGGCAGCAGATGCTCGGCCTCCTCAACCAGGGGCTCACGGCAGGGGCGCGCAACAGCG 10386 Query 10487 ACGTGGTGGCGGACGCACTCAAGGAGTTTCAGATCCGGGCTACTGACGGGTCCAAGGCGA 10546 |||| || || ||||| ||||||||||| |||||||| || || |||| ||| || | | Sbjct 10385 ACGTCGTCGCCGACGCGCTCAAGGAGTTCCAGATCCGCGCGACCGACGCGTCGCAGTCCA 10326 Query 10547 GTGCTGCCGCGTTCGAAGCTC-TGGGGTTCAACGCAGCCCAGATGACCGCCCAGATCGCC 10605 | || | || |||| |||| | | || | | ||| | |||||||| ||||||| Sbjct 10325 GCGCGGACGGGTTC-AAGCGCATCGGCCTGAGCGCGCAGGACATGACCGCGAAGATCGCA 10267 Query 10606 GGGGGCGGCGAAGGTGCGAAGAACGGTTTGGACGCGGTCCTGGACCGCCTGCGTGCAGTC 10665 | ||||| || ||||| | ||| | | |||||| ||| || || || Sbjct 10266 GCCGGCGGGGAGGGTGCCCGCGAGGGTCTCCAGCAGGTCCTCGACGCGCTACGCGCCACA 10207 Query 10666 GAGGACCCGGTTTTGCGCAGCCAGGCCGCAGTCGGTTTGTTCGGTACCAAGGCCGAGGAC 10725 |||||||| || ||||| | |||||| || | ||||||| || || |||||||| Sbjct 10206 GAGGACCCCGTGCAGCGCAACGCGGCCGCCGTGGAGCTGTTCGGAACGAAAGCCGAGGAT 10147 Query 10726 CTGGCCGCTTCGCTGCTGGCCCTGGACC 10753 || | | | |||| | || || |||| Sbjct 10146 CTCGGTGATGCGCTCTTCGCGCTCGACC 10119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144710348826612