Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq1095 104 2e-17 >seq1095 Length=312686 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||||||||| ||||| || |||||||| ||| ||||| ||||| Sbjct 81817 ATGCAGATTTTTGTCAAAACCTTGACTGGAAAAACCATCACCCTGGAAGTTGAACCTTCA 81876 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || || || || || || ||||| |||| ||| || Sbjct 81877 GATACTATTGAGAATGTCAAGGCTAAGATCCAAGATAAGGAAGGAATTCCACCCGACCAG 81936 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || ||||| | || || || ||| |||||||| || ||| | | || || ||| Sbjct 81937 CAGAGACTTATCTTCGCTGGAAAGCAACTGGAAGATGGTAGAACACTATCAGACTACAAT 81996 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || ||||||||||| || || ||| |||| || || || || Sbjct 81997 ATTCAGAAGGAATCTACACTTCACTTGGTGCTGCGACTCCGTGGAGG 82043 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||||||||| ||||| || |||||||| ||| ||||| ||||| Sbjct 88638 ATGCAGATTTTTGTCAAAACCTTGACTGGAAAAACCATCACCCTGGAAGTTGAACCTTCA 88697 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || || || || || || ||||| |||| ||| || Sbjct 88698 GATACTATTGAGAATGTCAAGGCTAAGATCCAAGATAAGGAAGGAATTCCACCCGACCAG 88757 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || ||||| | || || || ||| |||||||| || ||| | | || || ||| Sbjct 88758 CAGAGACTTATCTTCGCTGGAAAGCAACTGGAAGATGGTAGAACACTATCAGACTACAAT 88817 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || ||||||||||| || || ||| |||| || || || || Sbjct 88818 ATTCAGAAGGAATCTACACTTCACTTGGTGCTGCGACTCCGTGGAGG 88864 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| ||||| || || |||||||||| ||||| ||| ||||| ||| ||| Sbjct 90461 AATGCAAATCTTTGTAAAGACTCTGACCGGCAAGACCATCACCTTGGAAGTGGAGCCCTC 90520 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 |||| | ||| | || || || || ||||| || || |||| ||| || Sbjct 90521 CGATACCATTGAAAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATTCCACCCGACCA 90580 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || || ||||| | || || || ||| |||| ||| || ||| || | || || || Sbjct 90581 GCAGAGACTTATCTTCGCTGGAAAGCAACTGGAGGATGGTAGAACCCTGTCTGACTACAA 90640 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||||||||||||||| || || || | | || || ||||| Sbjct 90641 CATCCAAAAAGAATCTACACTCCACTTGGTTCTCAGACTTCGTGGTGG 90688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421571853516208