Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq230 102 2e-16 seq636 89.7 1e-12 seq335 89.7 1e-12 seq266 89.7 1e-12 seq242 89.7 1e-12 seq272 86.0 1e-11 >seq230 Length=975444 Score = 102 bits (112), Expect = 2e-16 Identities = 176/256 (69%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 230383 CAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGT 230442 |||||| || ||||| || || | |||| |||||| | ||| || | || ||| Sbjct 390125 CAAATCGTTTGCGAAGCCGTGGATATTGAAATTGAGTTCCTGACTGAAGCCTTACCTTGT 390184 Query 230443 CGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGC 230502 || || ||||||||||| | || | |||| ||||||||| | | || || ||||| Sbjct 390185 CGACTCATTGGCATGAATGGCGACTTGATGGCTCAGTACATCAAGTATGTCGCTGACCGA 390244 Query 230503 ATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATG 230562 | || ||| || || | | | || ||||||||| | | || || |||| || ||| Sbjct 390245 TTGCTTCTTGAGCTCGGATGCAACAAGGTGTACAACGTTGAAAATCCTTTTGACTTCATG 390304 Query 230563 GAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG 230622 ||| |||||| ||| | || || |||||||| || || || || || |||| || || Sbjct 390305 GAGAACATTTCTCTTGATGGCAAAACCAACTTTTTTGAGAAACGCGTTGGTGAATACCAA 390364 Query 230623 AGGCCTGGTGTGATGA 230638 | | | || || |||| Sbjct 390365 AAGGCAGGAGTCATGA 390380 >seq636 Length=62163 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 37790 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 37731 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 37730 CCCACGTTGGGC 37719 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||| | |||||||||||||||| Sbjct 62140 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATATCAGGGTCGTGGGTTCGAGC 62081 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 62080 CCCACGTTGGGC 62069 >seq335 Length=186942 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 136104 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 136163 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 136164 CCCACGTTGGGC 136175 >seq266 Length=499465 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 209241 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 209182 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 209181 CCCACGTTGGGC 209170 >seq242 Length=777683 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 258996 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 259055 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 259056 CCCACGTTGGGC 259067 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 285152 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 285093 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 285092 CCCACGTTGGGC 285081 >seq272 Length=471569 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||| ||||||| |||||||||||||||| Sbjct 16075 GCCCGGCTAGCTCAGTCGGTAGAGCATGACACTCTTAATCTCAGGGTCGTGGGTTCGAGC 16134 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 16135 CCCACGTTGGGC 16146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057761302110380