Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq230 145 8e-30 >seq230 Length=975444 Score = 145 bits (160), Expect = 8e-30 Identities = 417/631 (66%), Gaps = 18/631 (3%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 ||||||| || | ||||||||| || |||||||| |||||||| || ||||| || |||| Sbjct 390365 TTTGGTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCATCAAGAGAAATGTTCT 390306 Query 16734 CCATGAAATCAAAAGGATTAGTA--GCTGAAAATATTTTAGAGTACCCCAGTTCGGCGAT 16791 ||||||| ||||||||||| | | || | | || | | | || || || | Sbjct 390305 CCATGAAGTCAAAAGGATTTTCAACGTTGTACACCTTGT--TGCATCCGAGCTCAAGAAG 390248 Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851 |||| || || ||| | | || || || ||| || |||| ||||| || || || Sbjct 390247 CAATCGGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATTCATGCCAATGAG 390188 Query 16852 ACGTACCGGAAGAGCTTCCGTCA-AAAATCGTTGCTCTATAACAACCGCTTCCTTAATAA 16910 || || | ||||| |||| || || | || ||| | || ||||| || | Sbjct 390187 TCGACAAGGTAAGGCTTCAGTCAGGAACTCAAT-TTCAATATCCACGGCTTCGCAAACGA 390129 Query 16911 TACTAGCAA----CTCGTTCCTCGGAC--GGTGTATGTTTAAGATGTTTAAACATCAGAC 16964 | | |||| ||| || |||||| ||| || ||| || || |||||| | Sbjct 390128 T--TTGCAAAATCCTCTTT--TCGGACAACTTGT-TGACCAAG-TGCTTGTACATCAAGC 390075 Query 16965 ATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACC 17024 |||| || || ||| || || ||||||||| ||| | |||||| || ||||| | Sbjct 390074 ATGCAAAGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCTGAAAGTCAATC 390015 Query 17025 CGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATA 17084 |||||||| |||||| ||||| | ||| || || ||||| || || |||||||| | Sbjct 390014 CGGGCATCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCCGGAAAAGAAAA 389955 Query 17085 TACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAA 17144 | || ||||| || || || |||| | || ||| || || | |||| | | | Sbjct 389954 TTCCTTCGACTGAAGCGAAAGCGACAATTCTTTCTGCATAGGAAGCGTTATCCGCATTGA 389895 Query 17145 TCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAA 17204 |||| ||| | |||| | ||| || | || | | | || ||||| || || || | Sbjct 389894 TCCAGTTCAACGCCCATTTGGCCTTCTTCTGAACGGCAGGCACTGTTTCAATTGCGTTGA 389835 Query 17205 ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTT 17264 | | || | |||| | || | || || ||||| ||||| || ||||| ||| Sbjct 389834 AGAGGTTGTGGCGTTCCGCGGGATCTTTGATGTAGGTATCAATGAGGAGACTGTAAGTTT 389775 Query 17265 CGGAGTGTATGTTCTCCATGGCTATCTGAAA 17295 || || ||||| ||||| || | |||||| Sbjct 389774 CGCTATGAATGTTTTCCATAGCGACCTGAAA 389744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517515672925680