Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq230 111 2e-19 >seq230 Length=975444 Score = 111 bits (122), Expect = 2e-19 Identities = 301/458 (66%), Gaps = 2/458 (0%) Strand=Plus/Minus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 ||||||| |||| ||||||||| || || ||||| ||||| || || | ||| || || | Sbjct 390365 TTTGGTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCATCAAGAGAAATGTTCT 390306 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTA 16031 |||| || ||||| ||||| | | | | ||| | | || || || || | Sbjct 390305 CCATGAAGTCAAAAGGATTTTCAACGTTGTACACCTTGTTGCATCCGAGCTCAAGAAGCA 390246 Query 16032 ATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTC 16091 ||| || || ||| | | || || ||| ||| ||||||| ||| || || || |||| Sbjct 390245 ATCGGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATTCATGCCAATGAGTC 390186 Query 16092 GTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATAT 16151 | || | |||| || | || | ||| || | || ||||| || ||| | Sbjct 390185 GACAAGGTAAGGCTTCAGTCAGGAACTCAATTTCAATATCCACGGCTTCGCAAACGATTT 390126 Query 16152 CGGTGGCTCGTGTTT-CAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAG 16210 | || | ||| | ||| | | | | ||| || |||| | || || ||| Sbjct 390125 -GCAAAATCCTCTTTTCGGACAACTTGTTGACCAAGTGCTTGTACATCAAGCATGCAAAG 390067 Query 16211 TCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATT 16270 || ||| | |||||||||||| ||| | ||||||| ||||| || || ||||| Sbjct 390066 TCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCTGAAAGTCAATCCGGGCATC 390007 Query 16271 TTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCA 16330 |||||| ||||| | |||||| || || ||||| || |||||||| || || || Sbjct 390006 AATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCCGGAAAAGAAAATTCCTTCG 389947 Query 16331 ACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC 16368 || || || ||||||| | || ||| || || | ||| Sbjct 389946 ACTGAAGCGAAAGCGACAATTCTTTCTGCATAGGAAGC 389909 Score = 89.7 bits (98), Expect = 5e-13 Identities = 165/241 (68%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 16529 TGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC---CACGTAAAATCGTTCC 16585 || || ||||| ||||||| ||||| | ||||| ||||| || | || | ||| Sbjct 389641 TGGAAGCCATAAAAGCATCTGGCCTCAGGAATTTGAACTTCTTGCATG---AACCTTTCA 389585 Query 16586 GCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATG 16645 | ||||||||||| || || ||||| || ||||| || || || | |||||| ||| Sbjct 389584 ACAAGGTTCTCATTGACAATGCCGTCGGAGGCGGCAAAGAAGGCTAAGACGTGCTTGATG 389525 Query 16646 AAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACT 16705 || | |||||||| | | | ||||||| || || |||| | || | | Sbjct 389524 AAGTGCTTTTCGTCGTCCTTCAACTTGGCCCAATCTGCCAAGTCCATGGACAAGTCAATT 389465 Query 16706 TCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTAT 16765 || || | ||||| ||||| |||| || || || ||||||||||| ||||| | ||| Sbjct 389464 TCCTCGGCAGTCCAGAAGCTGGCCATGGCTTTCTTGTACATTTTCCAGATATCGTCATAT 389405 Query 16766 T 16766 | Sbjct 389404 T 389404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511384827462320