Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq239 134 1e-26 >seq239 Length=840022 Score = 134 bits (148), Expect = 1e-26 Identities = 278/411 (68%), Gaps = 2/411 (0%) Strand=Plus/Minus Query 18792 GACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGT 18851 || ||||| || ||||||| ||||| ||| | |||||||| |||||||| ||||| Sbjct 248162 GATCTTGGTCCTGTTTACGGATTCCAATGGCGTCATTTTGGTGCGGAATACCAAGACATG 248103 Query 18852 CAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAA 18911 || | | || | ||||| | |||||||| | || || || | |||||| Sbjct 248102 CATGCTGATTACTCTGGCCAAGGTGTGGATCAGCTCAAGGAGGTCATTGACAAAATTAAG 248043 Query 18912 ACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTA 18971 | || || || | | || || || || | ||||||| || | || | | | Sbjct 248042 AACAAGCCGGATGACAGGCGGATCATCATGTGTGCTTGGAACCCGACTGACCTGAGCAAA 247983 Query 18972 ATGGTACTACCTCCATGTCACACGTTATG-TCAGTTTTACGTTGCAAACGGTGAATTATC 19030 |||| | || || ||||| || || ||| |||||||| || || ||||| | Sbjct 247982 ATGGCTTTGCCACCTTGTCATT-GTCTTGCTCAATTTTACGTGGCCAATGGTGAGCTCAG 247924 Query 19031 CTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGG 19090 ||||||| | ||||| ||||| | |||||||| | || ||||| ||||||||||| Sbjct 247923 CTGCCAATTGTACCAAAGATCCGCTGATATGGGATTAGGTGTACCTTTCAACATTGCATC 247864 Query 19091 ATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAAT 19150 ||||| ||| | || | || | || ||||| || || | || || ||||| || | Sbjct 247863 TTATGCCCTTTTGACTCATATGATTGCTCATGTGACCGGTTTGAAGACTGGAGACTTTGT 247804 Query 19151 TCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAA 19201 |||||| | || ||||| ||| | |||||||| ||||| || ||||| || Sbjct 247803 TCATACCCTCGGCGATGCTCATGTCTACTTGAACCATATCGACGCTTTGAA 247753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399481476214170