Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq239 170 1e-37 >seq239 Length=840022 Score = 170 bits (188), Expect = 1e-37 Identities = 421/626 (67%), Gaps = 11/626 (2%) Strand=Plus/Plus Query 101645 GGAAACGGTCTAGGAGTTCGCGT-CAA-CTGCATTTTAAGAGCATCAATGTGATCTACAT 101702 || ||||| |||| ||| ||| ||| ||| | || | ||| || || || | | | Sbjct 247720 GGGAACGGCTTAGG--TTCACGTTCAAGCTGAGTCTTCAAAGCGTCGATATGGTTCAAGT 247777 Query 101703 AGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAG 101762 ||| |||||||| || | ||||| | ||| ||||||| | | | || ||||||| Sbjct 247778 AGACATGAGCATCGCCGAGGGTATGAACAAAGTCTCCAGTCTTCAAACCGGTCACATGAG 247837 Query 101763 CAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATAT 101822 ||||||| ||| ||||| | ||| |||||||| || || || ||||| ||||||| Sbjct 247838 CAATCATATGAGTCAAAAGGGCATAAGATGCAATGTTGAAAGGTACACCTAATCCCATAT 247897 Query 101823 CAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTA 101882 |||| |||||||| |||| ||| ||| |||| |||| || ||||||||| | Sbjct 247898 CAGCGGATCTTTGGTACAATTGGCAGCTGAGCTCACCATTGGCCACGTAAAATTGA-GCA 247956 Query 101883 ATAC-ATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATT 101941 | || ||||||||| ||||| ||||||| | ||| | |||||||||||||| Sbjct 247957 AGACAATGACAAGGTGGCAAAGCCATTTTGCTCAGGTCAGTCGGGTTCCAAGCACACATG 248016 Query 101942 AACATCCTTCTATCTGTAGGGTTTGTT-TTTATAGTATCAATCAACTGTTTTAATTGGTC 102000 | |||| || || | || ||||| || || | ||||| | || || | || || Sbjct 248017 ATGATCCGCCTGTC-ATCCGGCTTGTTCTTAATTTTGTCAATGACCTCCTTGAGCTGATC 248075 Query 102001 AACTCCTTCTCCTTTATAATC-GCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCC 102059 || |||| || ||||| || | | ||| ||||| || || ||||| | || Sbjct 248076 CACACCTTGGCCAGAGTAATCAGCATGC-ATGTCTTGGTATTCCGCACCAAAATGACGCC 248134 Query 102060 ACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTAT 102119 | || ||||| || ||||| |||||||| | || | | | || || | || | Sbjct 248135 ATTGGAATCCGTAAACAGGACCAAGATCATTGACTTCACGATGAGTCAATCCTTGCTTGT 248194 Query 102120 CTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTT 102179 | | ||| ||| |||||||| ||||||||||| | ||| | | || | || | Sbjct 248195 CCAGAAAGTCTCTTGATCCATTGGCATCCCAAATCCGGACGTTCTTTTCAGACAATTCAT 248254 Query 102180 TGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATA 102239 ||| | || || || | ||| ||||| || |||||||| ||| |||| |||||| Sbjct 248255 TGCCATTGGTTGAACCACGGATGAACCAAAAAAGTTCTTCTGCAATGCCTCGCCAAAAGG 248314 Query 102240 CTCTCTTAGTAGTTAA-AAGTGGAAA 102264 | | || || || || ||| ||||| Sbjct 248315 TTTTTTTGGTTGTCAATAAGGGGAAA 248340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361230832883126