Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq230 161 1e-34 seq318 140 4e-28 >seq230 Length=975444 Score = 161 bits (178), Expect = 1e-34 Identities = 423/642 (66%), Gaps = 15/642 (2%) Strand=Plus/Minus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 ||| ||||| |||||||||||||| || ||||| || ||||| || ||||| || || Sbjct 390379 CATGACTCCTGCCTTTTGGTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCATC 390320 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCC 23950 | || || || |||||||| || | ||||| ||| || || | | || |||| Sbjct 390319 AAGAGAAATGTTCTCCATGAAGTCAAAAGGATTTTCAACGTTGTACACCTTGTTGCATCC 390260 Query 23951 CAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATT 24010 | ||| || ||||| || |||||| ||| || || ||||| || | ||| Sbjct 390259 GAGCTCAAGAAGCAATCGGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATT 390200 Query 24011 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 24070 ||| || || ||| | || | || |||| || || || ||||||| || || Sbjct 390199 CATGCCAATGAGTCGACAAGGTAAGGCTTCAGTCAGGAACTCAATTTCAATATCCACGGC 390140 Query 24071 GTCTGTTATAAT-----AGATCTTACTGTTTCTTCA-CTCGGTGGATACAATAAATGTTT 24124 || | || | ||| | || || || || | || | || || || Sbjct 390139 TTCGCAAACGATTTGCAAAATCCT-CTTTTCGGACAACTTGTTG-----ACCAAGTGCTT 390086 Query 24125 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 24184 ||||||| ||||| || || || | ||| |||||||| || ||||||||| Sbjct 390085 GTACATCAAGCATGCAAAGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCT 390026 Query 24185 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 24244 || || | ||||||||| | || ||||| || ||||| || |||| ||||| ||| Sbjct 390025 GAAAGTCAATCCGGGCATCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCC 389966 Query 24245 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT 24304 ||||||||||||||||| |||| || || || | || ||||||| |||| ||| | Sbjct 389965 GGAAAAGAAAATTCCTTCGACTGAAGCGAAAGCGACAATTCTTTCTGCATAGGAAGCGTT 389906 Query 24305 GT---CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 24361 | ||| ||||| || ||||| | ||||||||| | || ||||| ||| || Sbjct 389905 ATCCGCATTGATCCAGTTCAACGCCCATTTGGCCTTCTTCTGAACGGCAGGCACTGTTTC 389846 Query 24362 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 24421 || || || ||||| | || ||| |||||| | || |||||||| | || Sbjct 389845 AATTGCGTTGAAGAGGTTGTGGCGTTCCGCGGGATCTTTGATGTAGGTATCAATGAGGAG 389786 Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAA 24463 ||| || |||| |||||||||||| || || | ||||| Sbjct 389785 ACTGTAAGTTTCGCTATGAATGTTTTCCATAGCGACCTGAAA 389744 >seq318 Length=230163 Score = 140 bits (154), Expect = 4e-28 Identities = 293/435 (67%), Gaps = 4/435 (1%) Strand=Plus/Minus Query 53759 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 53818 ||||| ||||| || || ||||| ||||| || ||||| || || || ||| | Sbjct 42764 ATCTCCGTGCAGAGGTTTGAGCACTTAATGGTGCCCAAATTCTGCTGGTTGGACTTGCGG 42705 Query 53819 TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATC 53878 || || || ||||| || || || | || |||||||| |||||||| || || || || Sbjct 42704 TTGCAAGCGTCCTTGTAGAGCATATAAGGAGTACCAGTCTCAATCTGCGACTCAATGATG 42645 Query 53879 GCTTTCCAGACGACACGAGCCTTTATTATAGATTT--GTATCTCTTTTCTCTTTCGTATA 53936 || ||| || | ||||||| | | | || | || | ||| |||||| Sbjct 42644 GCAGCCCAAACCTCTTGAGCCTTGACTT--GCTTGCGGAATTTGCCTTCAGCCTCGTATT 42587 Query 53937 GTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 53996 ||||||| ||||| || || ||||| | | ||||||| ||||| |||| | Sbjct 42586 TCTCGTACAATCTCTCAAAGTCTTCGCCCCAGCAGTCGGCCAATCCCGGACACTCATGGG 42527 Query 53997 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 54056 ||||||| | |||| |||| ||||| || |||||||| || | || ||||||| Sbjct 42526 GACACATGAGGCTCCACATTCCGAATTCCTTGACGCGTTTCATGAATAAGTCGGGAATCC 42467 Query 54057 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 54116 | || | | || || || | | || |||||||| ||||| || || |||| Sbjct 42466 AGAGCCCAAAGAAGAGGTCACGAGCCCTCTGTTCCTCCTTTCCGTGGTTTTTGCGGAGAT 42407 Query 54117 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCC 54176 | | ||| | | ||||| | ||||||||||||||||| |||| | |||| |||| Sbjct 42406 CCAAGAAATCGAAGATATCCGCGTGCCACGGTTCCAAGTAGATGGCGAAGGCTCCTGGCC 42347 Query 54177 GTTTGTTTCCTCCCT 54191 |||||| ||||||| Sbjct 42346 TTTTGTTGCCTCCCT 42332 Score = 105 bits (116), Expect = 8e-18 Identities = 229/340 (67%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 54325 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCAT 54384 |||||| || || ||||| || || || |||||||| ||| |||| || ||| | | Sbjct 41836 TTTAGAAATCAAAGCGCAGCGCTTCAAAGTATCATAAATGTCCTCAATGGAATCCCCACT 41777 Query 54385 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 54444 |||| | | ||||| || || || | ||| | | |||| | ||||| || | ||| Sbjct 41776 CATGGTCAAGAGAAAGCAACTGGATAATTGCGGCCTGGGAGTTGCGGCATTGAACATGGT 41717 Query 54445 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGAT-AGCTGAGT 54503 |||||||||||| || || ||| || || | | || || || || || | | | | Sbjct 41716 AGGAGAAGCGTGAGTGAATAGTTTCTCCGACATCATGTTATAAGTTTCAATGATATCA-T 41658 Query 54504 CTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 54563 | ||||| |||||| || || ||||| | ||| | ||| ||||| || | ||| | Sbjct 41657 CGATATCTTCGCCATGAATGCCGACGGCGACTCTCATCAGCATATGCTGGGGCCGTTCCA 41598 Query 54564 CGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 54623 ||| ||| || || || ||||| || ||||||||||| || ||||| || | Sbjct 41597 CGACTTTGCCGTCGATCTTGAGCAAATAACTCCGCTCCAAAGTTTTGAAGCCAAAGTATT 41538 Query 54624 TGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 ||| ||||| || ||||| | ||| | ||||| || Sbjct 41537 GGTAGCTGAAGTCGCGGTCGTAGACAATGGCGGAGTTCAG 41498 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 52798 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 52857 |||||| | ||||| ||||| | || || ||||| || || | | ||||||||||| Sbjct 44463 CTTGTCGACAGTGAACTGAATTGCAGAGGCTGCGGCCTTGGTCCTCAAGTAGTACATTCC 44404 Query 52858 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGG 52917 ||| || || |||| ||| ||||| || |||||| | || |||| | || | || Sbjct 44403 CGTCTTGAGGCCGACTTGCCAGCCGTAGAAGTGCATAGAGGACAGCTTGGCAAAATTGGG 44344 Query 52918 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 52977 || || || || | |||| || || || || ||||| |||||||| | ||| || | Sbjct 44343 GTCGGCGATGTGCACGTTCAATGACTGGCTCTGGTCGATAAAGGCTCCGCGGTCAGCCGA 44284 Query 52978 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 53022 ||| || | || || ||||| || ||||| | ||||| || Sbjct 44283 CATCTTGAGGACGGTTTTTTGGCTGATCTCCCAGACGGTTTTGTA 44239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593687268048480